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L1_008_000M1_scaffold_23

Search features with annotation key words

Displaying items 1-30 of 290 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_23_1
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(793..1509)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DDI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA82281.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L1_008_000M1_scaffold_23_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1794..3710)
DNA (1917bp) protein (639aa)
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthase n=1 Tax=Clostridium leptum CAG:27 RepID=R6NER2_9CLOT
NAD+ synthase {ECO:0000313|EMBL:CDC04706.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L1_008_000M1_scaffold_23_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3993..4763
DNA (771bp) protein (257aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00037F8A35
Uncharacterized protein {ECO:0000313|EMBL:EES78555.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_008_000M1_scaffold_23_4
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4787..5380
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LI11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS58350.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L1_008_000M1_scaffold_23_5
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists


5672..7612
DNA (1941bp) protein (647aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AXD6_9FIRM
L1_008_000M1_scaffold_23_6
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7696..8463
DNA (768bp) protein (256aa)
hydrolase, TatD family (EC:3.1.21.-)
hydrolase TatD n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035F6125
Hydrolase TatD family {ECO:0000313|EMBL:CDC12063.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L1_008_000M1_scaffold_23_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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8648..9499
DNA (852bp) protein (284aa)
YihY family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQF9_9FIRM
YihY family protein {ECO:0000313|EMBL:EDN01764.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ribonuclease BN
L1_008_000M1_scaffold_23_8
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9558..10700
DNA (1143bp) protein (381aa)
Predicted cyanate permease n=2 Tax=Clostridium RepID=D8GLW3_CLOLD
cyanate permease
Predicted cyanate permease {ECO:0000313|EMBL:ADK15537.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L1_008_000M1_scaffold_23_9
unknown

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comp(10948..11394)
DNA (447bp) protein (149aa)

This feature has no annotations

L1_008_000M1_scaffold_23_10
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11548..12222)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QBL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ19636.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
PAP2 superfamily.
L1_008_000M1_scaffold_23_11
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12561..13160)
DNA (600bp) protein (200aa)
Selenium metabolism protein YedF n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9C1_9FIRM
Selenium metabolism protein YedF {ECO:0000313|EMBL:EDS11990.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
yedF2; selenium metabolism protein YedF
L1_008_000M1_scaffold_23_12
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

13383..14243
DNA (861bp) protein (287aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
plsC3; 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I5C0_9FIRM
L1_008_000M1_scaffold_23_13
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14301..14627)
DNA (327bp) protein (109aa)
Thioredoxin n=2 Tax=Blautia RepID=C0CMV0_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
thioredoxin
L1_008_000M1_scaffold_23_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15217..16626
DNA (1410bp) protein (470aa)
Amino acid carrier protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCT2_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EES76981.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
amino acid carrier protein
L1_008_000M1_scaffold_23_15
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16877..18163
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QEC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20591.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
L1_008_000M1_scaffold_23_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18786..19847)
DNA (1062bp) protein (354aa)
Stage II sporulation protein D n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ0_9FIRM
Stage II sporulation protein D {ECO:0000313|EMBL:EDS09238.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
stage II sporulation protein D
L1_008_000M1_scaffold_23_17
unknown

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comp(20093..20929)
DNA (837bp) protein (279aa)

This feature has no annotations

L1_008_000M1_scaffold_23_18
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20926..21468)
DNA (543bp) protein (181aa)
Sigma-70, region 4 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHQ8_9FIRM
Sigma-70, region 4 {ECO:0000313|EMBL:EDS09026.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_23_19
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22012..24006
DNA (1995bp) protein (665aa)
DHHA1 domain protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BQJ5_9CLOT
DHHA1 domain protein {ECO:0000313|EMBL:CDA61381.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_008_000M1_scaffold_23_20
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24003..24449
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Anaerotruncus colihominis DSM 17241 PF95_9FIRM">RepID=B0PF95_9FIRM
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
LSU ribosomal protein L9P
L1_008_000M1_scaffold_23_21
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24626..25966
DNA (1341bp) protein (447aa)
Replicative DNA helicase {ECO:0000313|EMBL:EDS10027.1}; EC=3.6.1.- {ECO:0000313|EMBL:EDS10027.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
dnaC2; Replicative DNA helicase (EC:3.6.4.12)
Replicative DNA helicase n=1 Tax=Anaerotruncus colihominis DSM 17241 PF94_9FIRM">RepID=B0PF94_9FIRM
L1_008_000M1_scaffold_23_22
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25963..27354
DNA (1392bp) protein (464aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U4R0_ETHHY
tRNA(Ile)-lysidine synthetase
L1_008_000M1_scaffold_23_23
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

27351..27899
DNA (549bp) protein (183aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:ABB13649.1}; EC=2.4.2.8 {ECO:0000313|EMBL:ABB13649.1};; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
Hypoxanthine phosphoribosyltransferase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AD71_CARHZ
L1_008_000M1_scaffold_23_24
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27930..29999
DNA (2070bp) protein (690aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Anaerotruncus colihominis DSM 17241 PF91_9FIRM">RepID=B0PF91_9FIRM
L1_008_000M1_scaffold_23_25
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30373..32364
DNA (1992bp) protein (664aa)
DNA topoisomerase (EC:5.99.1.3)
DNA gyrase B subunit C-terminal domain protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DN56_9CLOT
DNA gyrase B subunit C-terminal domain protein {ECO:0000313|EMBL:CDA79322.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L1_008_000M1_scaffold_23_26
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32389..33645
DNA (1257bp) protein (419aa)
Putative competence-damage inducible protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CM17_9CLOT
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
competence/damage-inducible protein CinA
L1_008_000M1_scaffold_23_27
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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33836..36076
DNA (2241bp) protein (747aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
DNA gyrase/topoisomerase IV A subunit n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZJS9_9FIRM
hypothetical protein
L1_008_000M1_scaffold_23_28
unknown

Not on your lists

36480..36713
DNA (234bp) protein (78aa)
Protein translocase SecG subunit n=1 Tax=Clostridium sp. CAG:242 RepID=R6D4U3_9CLOT
L1_008_000M1_scaffold_23_29
unknown

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36907..37794
DNA (888bp) protein (296aa)

This feature has no annotations

L1_008_000M1_scaffold_23_30
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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37988..39175
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Vibrio parahaemolyticus RepID=UPI00030E5D4C
Whole genome shotgun sequence {ECO:0000313|EMBL:KIT35314.1}; TaxID=1288779 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus 49.;"
alcohol dehydrogenase
Displaying items 1-30 of 290 in total

View Taxonomy