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L1_008_000M1_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_216_1
unknown

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3..104
DNA (102bp) protein (34aa)

This feature has no annotations

L1_008_000M1_scaffold_216_2
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(147..506)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D8W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75264.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
recombinase
L1_008_000M1_scaffold_216_3
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(550..816)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D4U6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75265.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L1_008_000M1_scaffold_216_4
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(867..2333)
DNA (1467bp) protein (489aa)
Relaxase/mobilization nuclease domain protein n=2 Tax=Oscillibacter RepID=U2R148_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:ERK62561.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Relaxase/mobilization nuclease family protein
L1_008_000M1_scaffold_216_5
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(2337..2648)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DEG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75267.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L1_008_000M1_scaffold_216_6
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(2850..3926)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D506_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75268.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L1_008_000M1_scaffold_216_7
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

4146..5462
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D8W6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75269.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein predicted by Glimmer/Critica
L1_008_000M1_scaffold_216_8
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

5452..6363
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D4V1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75270.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
sig17; RNA polymerase sigma factor
L1_008_000M1_scaffold_216_9
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

6509..7204
DNA (696bp) protein (232aa)
Regulatory protein VanR n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DH45_9FIRM
Regulatory protein VanR {ECO:0000313|EMBL:CCX75271.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_216_10
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

7236..8303
DNA (1068bp) protein (356aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Sensor protein VanS (Vancomycin resistance protein vanS)(Vancomycin histidine protein kinase) n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DEG5_9FIRM
hypothetical protein
L1_008_000M1_scaffold_216_11
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

8435..9475
DNA (1041bp) protein (347aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D510_9FIRM
L1_008_000M1_scaffold_216_12
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

9472..10224
DNA (753bp) protein (251aa)
D D-dipeptidase/D D-carboxypeptidase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D8X1_9FIRM
D D-dipeptidase/D D-carboxypeptidase {ECO:0000313|EMBL:CCX75274.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
peptidase M15
L1_008_000M1_scaffold_216_13
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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10211..12292
DNA (2082bp) protein (694aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Alanine racemase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D4V5_9FIRM
alanine racemase
L1_008_000M1_scaffold_216_14

Not on your lists

comp(12472..13254)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AQ88_9CLOT
Transcriptional regulator, LuxR family protein {ECO:0000313|EMBL:AHF25899.1}; TaxID=1393650 species="Bacteria; environmental samples.;" source="uncultured bacterium Contigcl_1539.;"
regulatory protein, LuxR
L1_008_000M1_scaffold_216_15
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

13656..13910
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LZ07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87376.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_216_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13967..14371
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67462.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_008_000M1_scaffold_216_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14368..15117
DNA (750bp) protein (250aa)
ATP synthase F0 subcomplex A subunit (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVP6_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_008_000M1_scaffold_216_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15162..15422
DNA (261bp) protein (87aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0, C subunit n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVP5_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_008_000M1_scaffold_216_19
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

15451..15954
DNA (504bp) protein (168aa)
ATP synthase F0 subcomplex B subunit (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LNC0_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_216_20
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15951..16490
DNA (540bp) protein (180aa)
ATP synthase F1 subcomplex delta subunit (EC:3.6.3.14)
ATP synthase F1 subunit delta n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B3EEB5
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
L1_008_000M1_scaffold_216_21
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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16516..18030
DNA (1515bp) protein (505aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
ATP synthase F1 subcomplex alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ELP8_9FIRM
L1_008_000M1_scaffold_216_22
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

18046..18900
DNA (855bp) protein (285aa)
ATP synthase F1 subcomplex gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EIQ6_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
L1_008_000M1_scaffold_216_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18921..20318
DNA (1398bp) protein (466aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ATP synthase F1 subcomplex beta subunit (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVP0_9FIRM
L1_008_000M1_scaffold_216_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20322..20726
DNA (405bp) protein (135aa)
ATP synthase F1 subcomplex epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=2 Tax=Faecalibacterium prausnitzii RepID=D4K9X1_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_008_000M1_scaffold_216_25
unknown

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comp(20813..21832)
DNA (1020bp) protein (340aa)

This feature has no annotations

L1_008_000M1_scaffold_216_26
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21825..22391)
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SXV7_SYNGF
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADY57018.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
L1_008_000M1_scaffold_216_27
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23262..24167)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Desulfitobacterium hafniense RepID=UPI00036DCF44
Putative amidase domain {ECO:0000313|EMBL:CDX01395.1}; TaxID=49338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (Desulfitobacterium frappieri).;"
hypothetical protein
L1_008_000M1_scaffold_216_28
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24569..25123
DNA (555bp) protein (185aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Clostridium sp. CAG:217 RepID=R6JM83_9CLOT
L1_008_000M1_scaffold_216_29
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25120..25737
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FET5_9FIRM
Holliday junction DNA helicase RuvA
L1_008_000M1_scaffold_216_30
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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25975..27045
DNA (1071bp) protein (357aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NV13_9FIRM
Displaying items 1-30 of 91 in total

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