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L1_008_000M1_scaffold_536

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_536_1
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(104..766)
DNA (663bp) protein (221aa)
Resolvase, N-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEU2_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDS09875.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_008_000M1_scaffold_536_2
unknown

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910..1194
DNA (285bp) protein (95aa)

This feature has no annotations

L1_008_000M1_scaffold_536_3
Coprobacillus sp. CAG:698, Tenericutes, Bacteria

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1397..2284
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:698 RepID=R5FRW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY07830.1}; TaxID=1262856 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:698.;"
hypothetical protein
L1_008_000M1_scaffold_536_4
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2342..3298)
DNA (957bp) protein (319aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
Pseudouridine synthase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UDL7_RUMA7
RluA family pseudouridine synthase
L1_008_000M1_scaffold_536_5
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3578..4336
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS10375.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
DNA repair protein RadC
L1_008_000M1_scaffold_536_6
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4480..7308)
DNA (2829bp) protein (943aa)
UvrABC system protein A n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L969_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
excinuclease ABC subunit A
L1_008_000M1_scaffold_536_7
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7373..9340)
DNA (1968bp) protein (656aa)
UvrABC system protein B n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PE08_9FIRM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
uvrB; UvrABC system protein B
L1_008_000M1_scaffold_536_8
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9529..10287)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JVY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38364.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L1_008_000M1_scaffold_536_9
RBG_16_Chloroflexi_48_7_curated, Chloroflexi, Bacteria

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10431..10988
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Cohnella laeviribosi RepID=UPI000363FABA
hypothetical protein
Tax=RBG_16_Chloroflexi_48_7_curated
L1_008_000M1_scaffold_536_10
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11126..12553
DNA (1428bp) protein (476aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PE02_9FIRM
L1_008_000M1_scaffold_536_11
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12622..13032
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L973_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS55260.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Protein of unknown function (DUF964).
L1_008_000M1_scaffold_536_12
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13077..15692
DNA (2616bp) protein (872aa)
DNA mismatch repair protein MutS n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LA69_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
mutS; DNA mismatch repair protein MutS
L1_008_000M1_scaffold_536_13
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15747..17861
DNA (2115bp) protein (705aa)
DNA mismatch repair protein MutL n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDZ9_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
DNA mismatch repair protein MutL
L1_008_000M1_scaffold_536_14
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17891..18841
DNA (951bp) protein (317aa)
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
tRNA dimethylallyltransferase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LBR7_RUMC1
L1_008_000M1_scaffold_536_15
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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18838..20040
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U2H3_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU26264.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L1_008_000M1_scaffold_536_16
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20149..20640
DNA (492bp) protein (164aa)
Cell division protein SepF n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F5F0_CLOS4
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L1_008_000M1_scaffold_536_17
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20683..21486
DNA (804bp) protein (268aa)
DivIVA domain protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6D3E2_9CLOT
DivIVA domain protein {ECO:0000313|EMBL:CDA78611.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
DivIVA domain
L1_008_000M1_scaffold_536_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21548..22036
DNA (489bp) protein (163aa)
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Lipoprotein signal peptidase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L827_9FIRM
L1_008_000M1_scaffold_536_19
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22023..22940
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
RNA pseudouridine synthase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002F0A50E
RluA family pseudouridine synthase
L1_008_000M1_scaffold_536_20
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22961..23788
DNA (828bp) protein (276aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase thiamine diphosphate binding domain protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L6Y0_9FIRM
Transketolase thiamine diphosphate binding domain protein {ECO:0000313|EMBL:CCY74878.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
L1_008_000M1_scaffold_536_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23790..24731
DNA (942bp) protein (314aa)
tktB; Transketolase subunit B (EC:2.2.1.1)
Transketolase subunit B {ECO:0000313|EMBL:CCO05842.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CCO05842.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Transketolase central region n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T223_9FIRM
L1_008_000M1_scaffold_536_22
S_OP1_64_32, KB1, Bacteria

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24805..25173
DNA (369bp) protein (123aa)
Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D919_9FIRM
competence protein ComEA
Tax=S_OP1_64_32
L1_008_000M1_scaffold_536_23
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25824..26498
DNA (675bp) protein (225aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q236_9CLOT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EET84450.1}; Flags: Precursor;; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
two component transcriptional regulator, winged helix family
L1_008_000M1_scaffold_536_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26495..27733
DNA (1239bp) protein (413aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FL26_9CLOT
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_008_000M1_scaffold_536_25
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27863..33124)
DNA (5262bp) protein (1754aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51355.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
DEAD/DEAH box helicase domain-containing protein
L1_008_000M1_scaffold_536_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33127..34146)
DNA (1020bp) protein (340aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65991.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_008_000M1_scaffold_536_27
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34152..36803)
DNA (2652bp) protein (884aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJ80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51353.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
L1_008_000M1_scaffold_536_28
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36794..38359)
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IL62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51352.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L1_008_000M1_scaffold_536_29
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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38821..39141
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6J2P8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44527.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
hypothetical protein
L1_008_000M1_scaffold_536_30
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

39138..39602
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IGQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44526.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
hypothetical protein
Displaying items 1-30 of 37 in total

View Taxonomy