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L1_008_000M1_scaffold_694

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_694_1
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(1..255)
DNA (255bp) protein (85aa)
integrase n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B47423
Site-specific recombinase XerD {ECO:0000313|EMBL:CCX39675.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Site-specific recombinase XerD
L1_008_000M1_scaffold_694_2
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(615..869)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LI37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87123.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_694_3
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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1027..2355
DNA (1329bp) protein (443aa)
Transporter n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SIQ0_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
sodium- and chloride-dependent transporter, tyrosine transporter
L1_008_000M1_scaffold_694_4
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2458..3726)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6T618_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC54232.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
hypothetical protein
L1_008_000M1_scaffold_694_5
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3744..4460)
DNA (717bp) protein (239aa)
LytTr DNA-binding domain protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2D9_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EDR48221.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Response regulator of the LytR/AlgR family
L1_008_000M1_scaffold_694_6
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4667..6610
DNA (1944bp) protein (648aa)
Putative peptidase C11 family protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R8Y3_9FIRM
Putative peptidase C11 family protein {ECO:0000313|EMBL:CDF46180.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
putative peptidase C11 family protein
L1_008_000M1_scaffold_694_7
unknown

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6681..7193
DNA (513bp) protein (171aa)

This feature has no annotations

L1_008_000M1_scaffold_694_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7367..7993)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6N8W8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC08478.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L1_008_000M1_scaffold_694_9
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8082..8642)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9ITB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS25160.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein
L1_008_000M1_scaffold_694_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8694..8966)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NID1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC10955.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Copper chaperone
L1_008_000M1_scaffold_694_11
unknown

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comp(8963..9082)
DNA (120bp) protein (40aa)

This feature has no annotations

L1_008_000M1_scaffold_694_12
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9093..9482)
DNA (390bp) protein (130aa)
Iron dependent repressor n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EPJ4_9FIRM
Iron dependent repressor {ECO:0000313|EMBL:CDE04834.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L1_008_000M1_scaffold_694_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9553..9723)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HV26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41748.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L1_008_000M1_scaffold_694_14
Butyrivibrio fibrisolvens, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9773..12175)
DNA (2403bp) protein (801aa)
iron transporter FeoB n=1 Tax=Lachnospiraceae bacterium NK4A136 RepID=UPI0003B4B4E1
Ferrous iron transporter FeoB {ECO:0000313|EMBL:CBK73940.1}; TaxID=657324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio fibrisolvens 16/4.;"
ferrous iron transporter FeoB
L1_008_000M1_scaffold_694_15
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12268..12489)
DNA (222bp) protein (74aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VYQ5_9FIRM
Fe2+ transport system protein A {ECO:0000313|EMBL:CDD02280.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Fe2+ transport system protein A
L1_008_000M1_scaffold_694_16
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12556..12768)
DNA (213bp) protein (71aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PVQ2_9FIRM
Fe2+ transport system protein A {ECO:0000313|EMBL:CCZ20600.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Fe2+ transport system protein A
L1_008_000M1_scaffold_694_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13128..13865
DNA (738bp) protein (246aa)
Putative FeS assembly ATPase SufC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF8_9FIRM
Putative FeS assembly ATPase SufC {ECO:0000313|EMBL:EFB77543.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L1_008_000M1_scaffold_694_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13868..14788
DNA (921bp) protein (307aa)
SufB/sufD domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF7_9FIRM
SufB/sufD domain protein {ECO:0000313|EMBL:EFB77542.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L1_008_000M1_scaffold_694_19
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14807..15994
DNA (1188bp) protein (396aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Peptidase T n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GZU7_9FIRM
peptidase T
L1_008_000M1_scaffold_694_20
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16049..18025)
DNA (1977bp) protein (659aa)
Transcriptional regulator, LacI family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBX3_9FIRM
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EDS11098.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_008_000M1_scaffold_694_21
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18465..19736
DNA (1272bp) protein (424aa)
Cytosine permease n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZJJ9_THELI
cytosine permease
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
L1_008_000M1_scaffold_694_22
Aminomonas paucivorans, Aminomonas, Synergistales, Synergistia, Synergistetes, Bacteria

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19764..21050
DNA (1287bp) protein (429aa)
Cytosine deaminase {ECO:0000313|EMBL:EFQ24475.1}; EC=3.5.4.1 {ECO:0000313|EMBL:EFQ24475.1};; TaxID=584708 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminomonas.;" source="Aminomonas paucivorans DSM 12260.;"
codA2; cytosine deaminase (EC:3.5.4.1)
Cytosine deaminase n=1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CXY8_9BACT
L1_008_000M1_scaffold_694_23
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21070..21669
DNA (600bp) protein (200aa)
Putative secreted protein n=1 Tax=Clostridium sp. CAG:632 RepID=R5JYW1_9CLOT
Hypothetical protein
Tax=BJP_IG2103_Clostridiales_50_15
L1_008_000M1_scaffold_694_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22083..22658)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YLT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM54622.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative entericidin like toxin protein
L1_008_000M1_scaffold_694_25
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22655..23215)
DNA (561bp) protein (187aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Oscillibacter sp. KLE 1728 RepID=U2RR45_9FIRM
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ERK64788.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative RNA polymerase sigma factor (ECF subfamily)
L1_008_000M1_scaffold_694_26
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23545..24912
DNA (1368bp) protein (456aa)
multidrug transporter MatE n=1 Tax=Butyrivibrio fibrisolvens RepID=UPI0003B74F75
Putative uncharacterized protein {ECO:0000313|EMBL:EEC56523.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
matE2; multi antimicrobial extrusion protein MatE2
L1_008_000M1_scaffold_694_27
unknown

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25128..25361
DNA (234bp) protein (78aa)

This feature has no annotations

L1_008_000M1_scaffold_694_28
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25454..26614
DNA (1161bp) protein (387aa)
Extracellular ligand-binding receptor n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GKX1_9FIRM
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDB25085.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-)
L1_008_000M1_scaffold_694_29
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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26736..27614
DNA (879bp) protein (293aa)
ABC-type transporter integral membrane subunit n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DBR5_9FIRM
ABC-type transporter integral membrane subunit {ECO:0000313|EMBL:CDA82364.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
ABC transporter permease
L1_008_000M1_scaffold_694_30
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

27619..28632
DNA (1014bp) protein (338aa)
Branched-chain amino acid ABC transporter permease protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D103_9FIRM
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:CDA82363.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
ABC transporter permease
Displaying items 1-30 of 41 in total

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