ggKbase home page

L1_008_000M1_scaffold_1108

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1108_1
unknown

Not on your lists

comp(2..133)
DNA (132bp) protein (44aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_2
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

254..514
DNA (261bp) protein (87aa)
RelB/DinJ family addiction module antitoxin n=4 Tax=Clostridium RepID=N9YPP2_9CLOT
RelB/DinJ family addiction module antitoxin {ECO:0000313|EMBL:ENZ49346.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
RelB/DinJ family addiction module antitoxin
L1_008_000M1_scaffold_1108_3
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

518..778
DNA (261bp) protein (87aa)
Addiction module toxin n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R448_9FIRM
Addiction module toxin {ECO:0000313|EMBL:CDC29082.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
addiction module toxin
L1_008_000M1_scaffold_1108_4
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(780..1763)
DNA (984bp) protein (328aa)
DNA primase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UHJ4_RUMA7
DNA primase
DNA primase {ECO:0000313|EMBL:ADU21239.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L1_008_000M1_scaffold_1108_5
unknown

Not on your lists

comp(1800..2282)
DNA (483bp) protein (161aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_6
unknown

Not on your lists

2394..3026
DNA (633bp) protein (211aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3050..3526)
DNA (477bp) protein (159aa)
Helix-turn-helix n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K6F9_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL03168.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_008_000M1_scaffold_1108_8
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3561..5600)
DNA (2040bp) protein (680aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
DNA topoisomerase III n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E29
DNA topoisomerase III
L1_008_000M1_scaffold_1108_9
unknown

Not on your lists

comp(5615..5866)
DNA (252bp) protein (84aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_10
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5962..6774)
DNA (813bp) protein (271aa)
Helix-turn-helix domain protein n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S5Y3_CALKI
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADQ39656.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 /; I77R1B).;"
L1_008_000M1_scaffold_1108_11
unknown

Not on your lists

6840..7496
DNA (657bp) protein (219aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_12
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7559..7807)
DNA (249bp) protein (83aa)
Transition state transcriptional regulatory protein AbrB n=1 Tax=Clostridium sp. CAG:269 RepID=R7ITQ4_9CLOT
Transition state transcriptional regulatory protein AbrB {ECO:0000313|EMBL:CDE55094.1}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
transcriptional regulator, AbrB family
L1_008_000M1_scaffold_1108_13
unknown

Not on your lists

comp(7826..8680)
DNA (855bp) protein (285aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_14
unknown

Not on your lists

comp(8670..8948)
DNA (279bp) protein (93aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_15

Not on your lists

comp(8966..10612)
DNA (1647bp) protein (549aa)
Protein containing Peptidase M23 domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TGM7_9ZZZZ
Protein containing Peptidase M23 domain protein {ECO:0000313|EMBL:EKC58421.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
peptidase M23B
L1_008_000M1_scaffold_1108_16
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10649..12883)
DNA (2235bp) protein (745aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N738_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79120.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L1_008_000M1_scaffold_1108_17
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12858..13349)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000363098F
Uncharacterized protein {ECO:0000313|EMBL:EET61325.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L1_008_000M1_scaffold_1108_18
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13387..13902)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L698_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY74618.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
L1_008_000M1_scaffold_1108_19
Pyramidobacter piscolens, Pyramidobacter, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

14000..14221
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y379_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFB91278.1}; TaxID=352165 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Pyramidobacter.;" source="Pyramidobacter piscolens W5455.;"
hypothetical protein
L1_008_000M1_scaffold_1108_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14218..14484
DNA (267bp) protein (89aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2F9_9FIRM
addiction module toxin, RelE/StbE family
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:CBL00458.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_008_000M1_scaffold_1108_21
unknown

Not on your lists

comp(14527..15405)
DNA (879bp) protein (293aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_22
unknown

Not on your lists

comp(15402..15740)
DNA (339bp) protein (113aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15781..16179)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RRW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL72004.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1108_24
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16252..17118)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI00031E0C34
Uncharacterized protein {ECO:0000313|EMBL:EGX68186.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
membrane protein
L1_008_000M1_scaffold_1108_25
unknown

Not on your lists

comp(17136..17357)
DNA (222bp) protein (74aa)

This feature has no annotations

L1_008_000M1_scaffold_1108_26
Listeria weihenstephanensis, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17372..19168)
DNA (1797bp) protein (599aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK90_9FIRM
Conjugative transfer protein {ECO:0000313|EMBL:EUJ40624.1}; TaxID=1265845 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria weihenstephanensis FSL R9-0317.;"
TrsK-like protein
L1_008_000M1_scaffold_1108_27
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19149..19718)
DNA (570bp) protein (190aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=R3MHZ4_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:EOL91813.1}; TaxID=1169280 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0341.;"
hypothetical protein
L1_008_000M1_scaffold_1108_28

Not on your lists

comp(19702..24450)
DNA (4749bp) protein (1583aa)
Cna protein B-type domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U0B3_9ZZZZ
Cna protein B-type domain protein {ECO:0000313|EMBL:EKC78732.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Cna protein B-type domain.
L1_008_000M1_scaffold_1108_29

Not on your lists

comp(24723..25151)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SC58_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC51315.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1108_30
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25254..25724)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FDU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE13030.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
hypothetical protein
Displaying items 1-30 of 43 in total

View Taxonomy