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L1_008_000M1_scaffold_1137

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1137_1
unknown

Not on your lists

comp(2..412)
DNA (411bp) protein (137aa)

This feature has no annotations

L1_008_000M1_scaffold_1137_2
unknown

Not on your lists

comp(417..1328)
DNA (912bp) protein (304aa)

This feature has no annotations

L1_008_000M1_scaffold_1137_3
unknown

Not on your lists

comp(1346..1630)
DNA (285bp) protein (95aa)

This feature has no annotations

L1_008_000M1_scaffold_1137_4
unknown

Not on your lists

1914..2183
DNA (270bp) protein (90aa)

This feature has no annotations

L1_008_000M1_scaffold_1137_5
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2176..3633
DNA (1458bp) protein (486aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
proS; Prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KWN8_9FIRM
L1_008_000M1_scaffold_1137_6
unknown

Not on your lists

comp(3759..4037)
DNA (279bp) protein (93aa)

This feature has no annotations

L1_008_000M1_scaffold_1137_7
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4000..4269)
DNA (270bp) protein (90aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus albus 8 RepID=E9SEW3_RUMAL
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EGC02182.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
hypothetical protein
L1_008_000M1_scaffold_1137_8
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4789..6123
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V023_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ83585.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
conserved hypothetical protein
L1_008_000M1_scaffold_1137_9
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6725..9019
DNA (2295bp) protein (765aa)
Endoglucanase E; Short=EGE;; EC=3.2.1.4;; Cellulase; Endo-1,4-beta-glucanase E; Flags: Precursor;; TaxID=1265 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens.;"
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37375
L1_008_000M1_scaffold_1137_10
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9034..10638
DNA (1605bp) protein (535aa)
Dockerin type I repeat n=1 Tax=Ruminococcus sp. CAG:379 RepID=R6ZWI0_9FIRM
Dockerin type I repeat {ECO:0000313|EMBL:CDD52868.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Dockerin type I repeat.
L1_008_000M1_scaffold_1137_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10927..12138
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37E37
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06174.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_008_000M1_scaffold_1137_12
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12630..12830
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CRL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA74131.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L1_008_000M1_scaffold_1137_13
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12932..14545
DNA (1614bp) protein (538aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6D9N1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA74527.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
recombinase
L1_008_000M1_scaffold_1137_14
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14873..15625
DNA (753bp) protein (251aa)
Cell wall hydrolase/autolysin n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FFB2_9FIRM
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:CDE12382.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
N-acetylmuramoyl-L-alanine amidase
L1_008_000M1_scaffold_1137_15
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15615..16235
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MKV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF00593.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L1_008_000M1_scaffold_1137_16
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16232..16936)
DNA (705bp) protein (235aa)
4Fe-4S binding domain protein n=2 Tax=Clostridium RepID=U2C0E4_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07738.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
4Fe-4S ferredoxin
L1_008_000M1_scaffold_1137_17
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

17041..17715
DNA (675bp) protein (225aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LNG4_TREBD
CarD family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEE17922.1}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L1_008_000M1_scaffold_1137_18
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17692..18216)
DNA (525bp) protein (175aa)
Topology modulation protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KCH4_CLOBU
ATPase, AAA family {ECO:0000313|EMBL:KJZ84501.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
topology modulation protein
L1_008_000M1_scaffold_1137_19
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18269..18871)
DNA (603bp) protein (201aa)
Recombination protein RecR n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KWM9_9FIRM
recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L1_008_000M1_scaffold_1137_20
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18878..19222)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002F86178
Nucleoid-associated protein RF007C_10180 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
conserved hypothetical protein TIGR00103
L1_008_000M1_scaffold_1137_21
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19305..20876)
DNA (1572bp) protein (524aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:CBL18247.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBL18247.1};; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
DNA polymerase III, subunits gamma and tau n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LF52_RUMC1
L1_008_000M1_scaffold_1137_22
unknown

Not on your lists

20952..21200
DNA (249bp) protein (83aa)

This feature has no annotations

L1_008_000M1_scaffold_1137_23
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21948..22481)
DNA (534bp) protein (178aa)
Methylated-DNA-protein-cysteine methyltransferase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GMN0_EUBLK
methylated-DNA--protein-cysteine methyltransferase
Methylated-DNA-protein-cysteine methyltransferase {ECO:0000313|EMBL:ADO37093.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_1137_24
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22486..22839)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Alistipes onderdonkii RepID=UPI00036400CB
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE86549.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
L1_008_000M1_scaffold_1137_25
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22840..23079)
DNA (240bp) protein (80aa)
methylphosphotriester-DNA alkyltransferase (EC:2.1.1.-)
Putative uncharacterized protein n=1 Tax=Bacteroides ovatus 3_8_47FAA RepID=F7LFU2_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EGM99600.1}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
L1_008_000M1_scaffold_1137_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23027..23725)
DNA (699bp) protein (233aa)
DNA-3-methyladenine glycosylase II n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTB8_9FIRM
DNA-3-methyladenine glycosylase II {ECO:0000313|EMBL:CCZ78944.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA-3-methyladenine glycosylase II
L1_008_000M1_scaffold_1137_27
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23849..24745
DNA (897bp) protein (299aa)
Transcriptional regulator, AraC family n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X9W6_OXAFO
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEO29992.1}; TaxID=556269 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Oxalobacter.;" source="Oxalobacter formigenes OXCC13.;"
AraC family transcriptional regulator
L1_008_000M1_scaffold_1137_28
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24954..25934)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Paenibacillus sp. ICGEB2008 RepID=UPI0002E9430F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY11554.1}; TaxID=1406 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (Bacillus polymyxa).;"
L1_008_000M1_scaffold_1137_29
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25947..26915)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BNS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO81768.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
hypothetical protein
L1_008_000M1_scaffold_1137_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26912..27046)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K488_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32957.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
Displaying items 1-30 of 31 in total

View Taxonomy