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L1_008_000M1_scaffold_1764

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1764_1
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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276..971
DNA (696bp) protein (232aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MMV7_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
sigK; RNA polymerase sigma-K factor (sporulation-specific)
L1_008_000M1_scaffold_1764_2
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1015..2277)
DNA (1263bp) protein (421aa)
enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:CBL17619.1}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:CBL17619.1};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
Enolase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LDC4_RUMC1
L1_008_000M1_scaffold_1764_3
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2295..2897)
DNA (603bp) protein (201aa)
Rubrerythrin n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W2B9_9CLOT
Rubrerythrin {ECO:0000313|EMBL:ENY97125.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Rubrerythrin
L1_008_000M1_scaffold_1764_4
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3221..3862
DNA (642bp) protein (214aa)
Zn-dependent hydrolases including glyoxylases n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5VGR3_9FIRM
Zn-dependent hydrolases including glyoxylases {ECO:0000313|EMBL:CCZ82771.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
Zn-dependent hydrolases, including glyoxylases
L1_008_000M1_scaffold_1764_5
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3846..5294
DNA (1449bp) protein (483aa)
Coproporphyrinogen dehydrogenase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MQ59_9FIRM
Coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:CDF02501.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Radical SAM superfamily protein
L1_008_000M1_scaffold_1764_6
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5336..6421)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JJG3_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ85558.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_008_000M1_scaffold_1764_7
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6422..7366)
DNA (945bp) protein (315aa)
asparaginase n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00037F1CC3
peptidase T2 asparaginase 2
Peptidase T2 asparaginase 2 {ECO:0000313|EMBL:ADG20020.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
L1_008_000M1_scaffold_1764_8
GWF2_RBX1_35_9_curated, RBX1, Bacteria

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comp(7402..8388)
DNA (987bp) protein (329aa)
Glycosyl transferase family 2 id=3084865 bin=GWF2_OP9_related_35_9 species=Clostridium papyrosolvens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
glycosyl transferase family protein
Tax=GWF2_RBX1_35_9_curated
L1_008_000M1_scaffold_1764_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

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comp(8394..9977)
DNA (1584bp) protein (528aa)
Glycosyl transferase group 1 n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GCV1_9BACT
group 1 glycosyl transferase
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
L1_008_000M1_scaffold_1764_10
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10007..11170)
DNA (1164bp) protein (388aa)
Membrane protein n=1 Tax=Clostridium acetobutylicum (strain EA 2018) RepID=F0K7N6_CLOAE
hypothetical protein
Predicted membrane protein {ECO:0000313|EMBL:AAK78645.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
L1_008_000M1_scaffold_1764_11
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11167..12234)
DNA (1068bp) protein (356aa)
Sugar-binding periplasmic protein n=3 Tax=Clostridium acetobutylicum RepID=F0K7N5_CLOAE
Sugar-binding periplasmic protein
Sugar-binding periplasmic protein {ECO:0000313|EMBL:AAK78644.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
L1_008_000M1_scaffold_1764_12
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12257..13117)
DNA (861bp) protein (287aa)
Sugar permease n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EPG4_CLOPA
ABC-type sugar transport system, permease component
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:AGK96026.1}; Flags: Precursor;; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L1_008_000M1_scaffold_1764_13
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13110..13997)
DNA (888bp) protein (296aa)
Binding-protein-dependent transport systems inner membrane component n=7 Tax=Clostridium thermocellum RepID=E6US78_CLOTL
binding-protein-dependent transport system inner membrane protein
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:AGK96025.1}; Flags: Precursor;; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L1_008_000M1_scaffold_1764_14
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13990..15387)
DNA (1398bp) protein (466aa)
Sugar-binding periplasmic protein n=2 Tax=Clostridium acetobutylicum RepID=F7ZUZ2_CLOAT
sugar-binding periplasmic protein
Sugar-binding periplasmic protein {ECO:0000313|EMBL:AAK78641.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
L1_008_000M1_scaffold_1764_15
unknown

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comp(15693..15896)
DNA (204bp) protein (68aa)

This feature has no annotations

L1_008_000M1_scaffold_1764_16
unknown

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comp(16219..16422)
DNA (204bp) protein (68aa)

This feature has no annotations

L1_008_000M1_scaffold_1764_17
unknown

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comp(16526..16795)
DNA (270bp) protein (90aa)

This feature has no annotations

L1_008_000M1_scaffold_1764_18
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16805..17932)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I6T5_CLOCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL76927.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L1_008_000M1_scaffold_1764_19
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17948..19363)
DNA (1416bp) protein (472aa)
CLI_3235-class bacteriocin maturation radical SAM enzyme n=1 Tax=Clostridium sp. BNL1100 RepID=H2J8N0_9CLOT
CLI_3235-class bacteriocin maturation radical SAM enzyme
Radical SAM protein {ECO:0000313|EMBL:EPR11660.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
L1_008_000M1_scaffold_1764_20
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19376..20836)
DNA (1461bp) protein (487aa)
Subtilase family protease n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KIZ5_CLOPA
subtilase family protease
Subtilase family protease {ECO:0000313|EMBL:AGK99600.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L1_008_000M1_scaffold_1764_21
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20863..22665)
DNA (1803bp) protein (601aa)
ABC transporter related n=1 Tax=Clostridium sp. CAG:448 RepID=R6TZB2_9CLOT
ABC transporter related {ECO:0000313|EMBL:CDC63922.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
multidrug ABC transporter ATPase/permease
L1_008_000M1_scaffold_1764_22
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22708..23967)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NKS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ04775.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
capsular polysaccharide biosynthesis protein
L1_008_000M1_scaffold_1764_23
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(23968..24237)
DNA (270bp) protein (90aa)
Phosphopantetheine attachment site n=1 Tax=Clostridium termitidis CT1112 RepID=S0FK50_9CLOT
Phosphopantetheine attachment site family protein {ECO:0000313|EMBL:KFN11286.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
L1_008_000M1_scaffold_1764_24
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(24254..25711)
DNA (1458bp) protein (486aa)
lcfB1; long-chain-fatty-acid--CoA ligase LcfB (EC:6.2.1.3)
Putative AMP-dependent synthetase and ligase n=1 Tax=Streptococcus constellatus subsp. pharyngis C1050 RepID=T1ZP67_STRCV
AMP-binding enzyme family protein {ECO:0000313|EMBL:KFN11133.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
L1_008_000M1_scaffold_1764_25
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25979..26719)
DNA (741bp) protein (247aa)
DNA-binding response regulator n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5U0_9FIRM
DNA-binding response regulator {ECO:0000313|EMBL:CDE34720.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
response regulator
L1_008_000M1_scaffold_1764_26
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26999..28291
DNA (1293bp) protein (431aa)
Glutamine synthetase type I n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MI81_9FIRM
Glutamine synthetase type I {ECO:0000313|EMBL:CDF00789.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
glutamine synthetase, type I
L1_008_000M1_scaffold_1764_27
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28306..28875
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF00788.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
ANTAR domain-containing protein
L1_008_000M1_scaffold_1764_28
Anaerostipes sp. 3_2_56FAA, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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28977..29600
DNA (624bp) protein (208aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=665937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes sp. 3_2_56FAA.;"
Superoxide dismutase n=2 Tax=Anaerostipes RepID=E5VW01_9FIRM
superoxide dismutase
L1_008_000M1_scaffold_1764_29
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29563..30087)
DNA (525bp) protein (175aa)
VanZ family protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L1G7_9FIRM
VanZ family protein {ECO:0000313|EMBL:CDE81788.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
phosphotransbutyrylase
L1_008_000M1_scaffold_1764_30
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30342..33416
DNA (3075bp) protein (1025aa)
Dockerin type I repeat./Ricin-type beta-trefoil lectin domain n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FDE8_9FIRM
Dockerin type I repeat./Ricin-type beta-trefoil lectin domain {ECO:0000313|EMBL:CDE13309.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Dockerin type I repeat./Ricin-type beta-trefoil lectin domain.
Displaying items 1-30 of 34 in total

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