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L1_008_000M1_scaffold_2734

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2734_1
Clostridium sp. CAG:609, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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156..338
DNA (183bp) protein (61aa)
Integrase catalytic region n=1 Tax=Clostridium sp. CAG:609 RepID=R7P3T5_9CLOT
Integrase catalytic region {ECO:0000313|EMBL:CDF20404.1}; TaxID=1262827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:609.;"
transposase of ISErh3
L1_008_000M1_scaffold_2734_2
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1295..1720)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K4X4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHR38967.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
Type II restriction enzyme, methylase subunit
L1_008_000M1_scaffold_2734_3
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2085..2822
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UHG5_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU21210.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L1_008_000M1_scaffold_2734_4
unknown

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comp(2997..3407)
DNA (411bp) protein (137aa)

This feature has no annotations

L1_008_000M1_scaffold_2734_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3500..3889
DNA (390bp) protein (130aa)
DNA primase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDC3_9FIRM
DNA primase {ECO:0000313|EMBL:CDC67689.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
DNA primase
L1_008_000M1_scaffold_2734_6
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4357..5406
DNA (1050bp) protein (350aa)
Plasmid recombination protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UEY5_RUMA7
Recombinase {ECO:0000313|EMBL:EXM39647.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
plasmid recombination protein
L1_008_000M1_scaffold_2734_7
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5618..5812
DNA (195bp) protein (65aa)
integrase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37419
Integrase family protein {ECO:0000313|EMBL:CDE82217.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
integrase family protein
L1_008_000M1_scaffold_2734_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5951..6352)
DNA (402bp) protein (134aa)
30S ribosomal protein S9 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KV38_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
SSU ribosomal protein S9P
L1_008_000M1_scaffold_2734_9
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6372..6800)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MS95_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
rplM; ribosomal protein L13
L1_008_000M1_scaffold_2734_10
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7084..7656)
DNA (573bp) protein (191aa)
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LE60_RUMC1
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family {ECO:0000313|EMBL:CDD53460.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L1_008_000M1_scaffold_2734_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8250..9110)
DNA (861bp) protein (287aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7AZ84_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20527.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L1_008_000M1_scaffold_2734_12
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9256..10125)
DNA (870bp) protein (290aa)
Predicted xylanase/chitin deacetylase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MIA1_9FIRM
Predicted xylanase/chitin deacetylase {ECO:0000313|EMBL:CDF00814.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Predicted xylanase/chitin deacetylase
L1_008_000M1_scaffold_2734_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10252..11388
DNA (1137bp) protein (379aa)
Stage II sporulation protein P n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEH0_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:ERJ96926.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
stage II sporulation protein P
L1_008_000M1_scaffold_2734_14
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11406..11735
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:379 RepID=R6ZXK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD53253.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L1_008_000M1_scaffold_2734_15
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11692..12279)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7ACL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD53254.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
hypothetical protein
L1_008_000M1_scaffold_2734_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13268..14050
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KFW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97431.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L1_008_000M1_scaffold_2734_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14081..14317
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M6Q6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06338.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_008_000M1_scaffold_2734_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14652..15056
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37099
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34325.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_2734_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15362..17698
DNA (2337bp) protein (779aa)
Uncharacterized protein n=2 Tax=Listeria monocytogenes RepID=D2P300_LISM1
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03981.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_008_000M1_scaffold_2734_20
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18080..24046
DNA (5967bp) protein (1989aa)
Uncharacterized protein n=1 Tax=Clostridium thermocellum BC1 RepID=U4MQJ9_CLOTM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN53243.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_008_000M1_scaffold_2734_21

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25089..25436
DNA (348bp) protein (116aa)
mazF; Toxin MazF (EC:3.1.-.-)
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=human gut metagenome RepID=K1RF06_9ZZZZ
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:EKC44178.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_2734_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25429..25590
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M6N6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97409.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Displaying 22 items

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