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L1_008_000M1_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 274 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_9_1
unknown

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60..572
DNA (513bp) protein (171aa)

This feature has no annotations

L1_008_000M1_scaffold_9_2

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686..1000
DNA (315bp) protein (105aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1RP01_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC43380.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_9_3
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1336..2676)
DNA (1341bp) protein (447aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KBN7_9FIRM
adenosylmethionine-8-amino-7-oxononanoate transaminase
L1_008_000M1_scaffold_9_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2728..3402)
DNA (675bp) protein (225aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
dethiobiotin synthase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Dorea longicatena CAG:42 RepID=R7G3W3_9FIRM
L1_008_000M1_scaffold_9_5
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3395..4366)
DNA (972bp) protein (324aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Biotin synthase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MSY6_9FIRM
biotin synthetase
L1_008_000M1_scaffold_9_6
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4363..4941)
DNA (579bp) protein (193aa)
BioY family protein n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KWD7_9FIRM
BioY family protein {ECO:0000313|EMBL:EFR33826.1}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
hypothetical protein
L1_008_000M1_scaffold_9_7
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5083..6345
DNA (1263bp) protein (421aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MR19_9FIRM
Folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:CDF02293.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L1_008_000M1_scaffold_9_8
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6322..7581)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N0E2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS76431.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
L1_008_000M1_scaffold_9_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7604..8341)
DNA (738bp) protein (246aa)
Response regulator of the LytR/AlgR family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUT4_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CBK96853.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_9_10
unknown

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8679..8819
DNA (141bp) protein (47aa)

This feature has no annotations

L1_008_000M1_scaffold_9_11
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8987..11296
DNA (2310bp) protein (770aa)
Glycosyl hydrolase family 9 n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V1U0_9FIRM
Glycosyl hydrolase family 9 {ECO:0000313|EMBL:CCZ84265.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
Glycosyl hydrolase family 9
L1_008_000M1_scaffold_9_12
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11592..11912)
DNA (321bp) protein (107aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R7AK98_9FIRM
Protein of unknown function (DUF1292).
Uncharacterized protein {ECO:0000313|EMBL:CDD53851.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L1_008_000M1_scaffold_9_13
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12847..13932)
DNA (1086bp) protein (362aa)
RNA polymerase sigma factor SigA n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MM77_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_9_14
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13974..15719)
DNA (1746bp) protein (582aa)
DNA primase, catalytic core (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
DNA primase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4L9P0_RUMC1
L1_008_000M1_scaffold_9_15
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15728..16717)
DNA (990bp) protein (330aa)
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase, putative n=2 Tax=Ruminococcus RepID=D4L9P1_RUMC1
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L1_008_000M1_scaffold_9_16
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16854..17507)
DNA (654bp) protein (218aa)
K+ transport systems NAD-binding component n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KW73_9FIRM
K+ transport systems NAD-binding component {ECO:0000313|EMBL:CDE79988.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
K+ transport systems, NAD-binding component
L1_008_000M1_scaffold_9_17
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17574..18920)
DNA (1347bp) protein (449aa)
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:ABN52881.1}; EC=3.6.3.14 {ECO:0000313|EMBL:ABN52881.1};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Potassium uptake protein, TrkH family n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DG02_CLOTH
TrkH family potassium uptake protein
L1_008_000M1_scaffold_9_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19149..20726
DNA (1578bp) protein (526aa)
FAD dependent oxidoreductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEK0_9FIRM
FAD dependent oxidoreductase {ECO:0000313|EMBL:CDC66296.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L1_008_000M1_scaffold_9_19
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20815..21333)
DNA (519bp) protein (173aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Putative cob(I)yrinic acid a c-diamide adenosyltransferase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2A4_9FIRM
Putative cob(I)yrinic acid a c-diamide adenosyltransferase {ECO:0000313|EMBL:CDE82128.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L1_008_000M1_scaffold_9_20
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21336..22418)
DNA (1083bp) protein (361aa)
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=2 Tax=Ruminococcus RepID=D4LAQ3_RUMC1
Aspartate carbamoyltransferase {ECO:0000313|EMBL:CDD53772.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L1_008_000M1_scaffold_9_21
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22448..23116)
DNA (669bp) protein (223aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MJG8_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDF00526.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L1_008_000M1_scaffold_9_22
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23140..25014)
DNA (1875bp) protein (625aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:CBL16700.1}; EC=6.3.5.4 {ECO:0000313|EMBL:CBL16700.1};; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LAQ5_RUMC1
L1_008_000M1_scaffold_9_23
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25352..26215
DNA (864bp) protein (288aa)
Lysophospholipase L1 and related esterases n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LAQ7_RUMC1
Lysophospholipase L1 and related esterases
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:CBL16702.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_9_24

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26252..26719
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1TQL3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC72023.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_9_25
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26793..28478
DNA (1686bp) protein (562aa)
ABC transporter substrate-binding protein family 5 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLM7_9FIRM
ABC transporter substrate-binding protein family 5 {ECO:0000313|EMBL:CDF01236.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
ABC-type oligopeptide transport system, periplasmic component
L1_008_000M1_scaffold_9_26
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28659..29303
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KWR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE80810.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L1_008_000M1_scaffold_9_27
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29375..29944)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MM85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF01083.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L1_008_000M1_scaffold_9_28
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29979..31073)
DNA (1095bp) protein (365aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MMW2_9FIRM
L1_008_000M1_scaffold_9_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31054..32289)
DNA (1236bp) protein (412aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KVR5_9FIRM
L1_008_000M1_scaffold_9_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32294..33337)
DNA (1044bp) protein (348aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCC4_9FIRM
Displaying items 1-30 of 274 in total

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