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L1_008_000M1_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 215 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_17_1
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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288..776
DNA (489bp) protein (163aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEI5_RUMC1
TrbL/VirB6 plasmid conjugal transfer protein.
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:CBL18030.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_17_2
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

831..1223
DNA (393bp) protein (131aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEI5_RUMC1
TrbL/VirB6 plasmid conjugal transfer protein.
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:CBL18030.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_17_3
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1234..1605
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEI6_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18031.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_17_4
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1648..4092
DNA (2445bp) protein (815aa)
conjugal transfer protein TraE n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37814
Conjugal transfer protein TraE {ECO:0000313|EMBL:EWM55194.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Domain of unknown function DUF87.
L1_008_000M1_scaffold_17_5
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4114..5484
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37813
Uncharacterized protein {ECO:0000313|EMBL:EWM53944.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L1_008_000M1_scaffold_17_6
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5645..6898
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37813
Uncharacterized protein {ECO:0000313|EMBL:EWM53944.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
L1_008_000M1_scaffold_17_7
unknown

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6911..7210
DNA (300bp) protein (100aa)

This feature has no annotations

L1_008_000M1_scaffold_17_8
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7191..7976
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEJ2_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18037.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_17_9
unknown

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7991..8260
DNA (270bp) protein (90aa)

This feature has no annotations

L1_008_000M1_scaffold_17_10
unknown

Not on your lists

8285..8431
DNA (147bp) protein (49aa)

This feature has no annotations

L1_008_000M1_scaffold_17_11
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8409..9341
DNA (933bp) protein (311aa)
DNA-cytosine methyltransferase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3780F
Uncharacterized protein {ECO:0000313|EMBL:EWM53948.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Site-specific DNA methylase
L1_008_000M1_scaffold_17_12
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9331..10350
DNA (1020bp) protein (340aa)
phosphoadenosine phosphosulfate reductase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3780E
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes {ECO:0000313|EMBL:CBL18040.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_17_13
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10477..10695
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEJ8_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18043.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_17_14
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10735..11640)
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEJ9_RUMC1
Domain of unknown function (DUF1814).
Uncharacterized protein {ECO:0000313|EMBL:CBL18044.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_17_15
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11630..12244)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UHL2_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU21257.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L1_008_000M1_scaffold_17_16
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12353..14362
DNA (2010bp) protein (670aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
DNA topoisomerase III, bacteria and conjugative plasmid (EC:5.99.1.2)
DNA topoisomerase III n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E29
L1_008_000M1_scaffold_17_17
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14362..14859
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2C4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82186.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L1_008_000M1_scaffold_17_18
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14856..15407
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37808
Uncharacterized protein {ECO:0000313|EMBL:EWM53956.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
L1_008_000M1_scaffold_17_19
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15410..17437
DNA (2028bp) protein (676aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37807
Uncharacterized protein {ECO:0000313|EMBL:CDE82184.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L1_008_000M1_scaffold_17_20
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17437..18093
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37806
Uncharacterized protein {ECO:0000313|EMBL:EWM53958.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Mismatch repair ATPase (MutS family)
L1_008_000M1_scaffold_17_21
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18123..26855
DNA (8733bp) protein (2911aa)
Helicase protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCH7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWM53969.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
DNA methylase
L1_008_000M1_scaffold_17_22

Not on your lists

26874..27299
DNA (426bp) protein (142aa)
Helicase (Fragment) n=1 Tax=human gut metagenome RepID=K1RMJ9_9ZZZZ
Helicase {ECO:0000313|EMBL:EKC49847.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein predicted by Glimmer/Critica
L1_008_000M1_scaffold_17_23
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27347..27541)
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0B562_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ46799.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L1_008_000M1_scaffold_17_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27792..28154)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5UYG0_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04088.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_008_000M1_scaffold_17_25
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28164..28856)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus 8 RepID=E9SFD8_RUMAL
Uncharacterized protein {ECO:0000313|EMBL:EGC02002.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
L1_008_000M1_scaffold_17_26
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29075..29494
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5UZA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ83365.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
L1_008_000M1_scaffold_17_27
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29520..29972
DNA (453bp) protein (151aa)
Acetyltransferase, GNAT family n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LB98_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EET62229.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Acetyltransferase (GNAT) family.
L1_008_000M1_scaffold_17_28
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29981..31360)
DNA (1380bp) protein (460aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5VS46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWM54017.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Relaxase/mobilization nuclease family protein
L1_008_000M1_scaffold_17_29
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31309..31650)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TI54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWM54018.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Bacterial mobilisation protein (MobC).
L1_008_000M1_scaffold_17_30
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

32017..32487
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:266 RepID=R6HGN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB36110.1}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:266.;"
Transcriptional regulator
Displaying items 1-30 of 215 in total

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