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L1_008_000M1_scaffold_237

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_237_1
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

125..454
DNA (330bp) protein (110aa)
Predicted transcriptional regulators n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H0D3_9FIRM
Predicted transcriptional regulators {ECO:0000313|EMBL:CDE32751.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_237_2
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(564..1205)
DNA (642bp) protein (214aa)
Bacitracin ABC transporter, ATP-binding protein BcrA family protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCN7_RUMAL
Bacitracin ABC transporter, ATP-binding protein BcrA family protein {ECO:0000313|EMBL:EGC02872.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
ABC-type multidrug transport system, ATPase component
L1_008_000M1_scaffold_237_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1207..2076)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00349.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L1_008_000M1_scaffold_237_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2066..2962)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JT83_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96302.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_237_5
unknown

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comp(2974..4218)
DNA (1245bp) protein (415aa)

This feature has no annotations

L1_008_000M1_scaffold_237_6
unknown

Not on your lists

comp(4309..4692)
DNA (384bp) protein (128aa)

This feature has no annotations

L1_008_000M1_scaffold_237_7
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5163..6395)
DNA (1233bp) protein (411aa)
Nucleotide sugar dehydrogenase n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FG36_9FIRM
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:CDE13473.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
nucleotide sugar dehydrogenase
L1_008_000M1_scaffold_237_8
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6439..7518)
DNA (1080bp) protein (360aa)
Nucleoside-diphosphate-sugar epimerases n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FIE8_9FIRM
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:CDE13472.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Nucleoside-diphosphate-sugar epimerases
L1_008_000M1_scaffold_237_9
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7521..9017)
DNA (1497bp) protein (499aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FFL9_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDE13471.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
hypothetical protein
L1_008_000M1_scaffold_237_10
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9032..9937)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MJW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF00925.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
glycosyltransferase
L1_008_000M1_scaffold_237_11
Lysinibacillus massiliensis, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9946..11043)
DNA (1098bp) protein (366aa)
Putative polysaccharide polymerase protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VKJ0_CLOSH
polysaccharide polymerase
Uncharacterized protein {ECO:0000313|EMBL:KGR91204.1}; TaxID=1211035 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529.;"
L1_008_000M1_scaffold_237_12
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11053..12156)
DNA (1104bp) protein (368aa)
Glycosyl transferase group 1 n=5 Tax=Clostridium thermocellum RepID=E6UMJ2_CLOTL
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ABX41582.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_237_13
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12174..12989)
DNA (816bp) protein (272aa)
Putative glycosyltransferase {ECO:0000313|EMBL:KDR94659.1}; EC=2.4.-.- {ECO:0000313|EMBL:KDR94659.1};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
Uncharacterized protein n=1 Tax=Bacillus cereus VD140 RepID=R8S6N3_BACCE
glycosyl transferase family protein
L1_008_000M1_scaffold_237_14
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12999..13628)
DNA (630bp) protein (210aa)
Bacterial sugar transferase family protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0CS74_CLOSO
Glycosyl transferase {ECO:0000313|EMBL:CEQ18549.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
sugar transferase
L1_008_000M1_scaffold_237_15
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13625..14311)
DNA (687bp) protein (229aa)
capC; Tyrosine-protein phosphatase (EC:3.1.3.48)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002FD3047
Uncharacterized protein {ECO:0000313|EMBL:EWM54571.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
L1_008_000M1_scaffold_237_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14305..15834)
DNA (1530bp) protein (510aa)
epsB; tyrosine-protein kinase (EC:2.7.10.1)
Capsular exopolysaccharide family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4X7_9FIRM
Capsular exopolysaccharide family {ECO:0000313|EMBL:CDC67265.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_008_000M1_scaffold_237_17
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16015..17100)
DNA (1086bp) protein (362aa)
Site-specific recombinase, phage integrase family n=1 Tax=Ruminococcus albus 8 RepID=E9S774_RUMAL
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EGC04870.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
integrase family protein
L1_008_000M1_scaffold_237_18
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17469..17822
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZBS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ11230.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L1_008_000M1_scaffold_237_19
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18053..18700
DNA (648bp) protein (216aa)
Putative cellulosomal scaffoldin protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLY6_9FIRM
Putative cellulosomal scaffoldin protein {ECO:0000313|EMBL:CDF01655.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L1_008_000M1_scaffold_237_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18934..19833
DNA (900bp) protein (300aa)
SCP-like extracellular n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37046
Transporter {ECO:0000313|EMBL:EGB90510.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
SCP-like extracellular
L1_008_000M1_scaffold_237_21
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19929..21452)
DNA (1524bp) protein (508aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MJC2_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDF01204.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L1_008_000M1_scaffold_237_22
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21470..21694)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MML6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF01203.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
XRE family transcriptional regulator
L1_008_000M1_scaffold_237_23
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21708..22169)
DNA (462bp) protein (154aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MN97_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDF01202.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L1_008_000M1_scaffold_237_24
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22390..24324
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C622_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG72556.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L1_008_000M1_scaffold_237_25
Methanolacinia petrolearia, Methanolacinia, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(24483..26549)
DNA (2067bp) protein (689aa)
Uncharacterized protein n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RD34_METP4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN35934.1}; Flags: Precursor;; TaxID=679926 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia.;" source="Methanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847); (Methanoplanus petrolearius).;"
L1_008_000M1_scaffold_237_26
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26812..27252
DNA (441bp) protein (147aa)
ACT domain-containing protein (EC:5.4.99.5)
ACT domain-containing protein n=2 Tax=Ruminococcus RepID=D4LDP2_RUMC1
ACT domain-containing protein {ECO:0000313|EMBL:CDD54007.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L1_008_000M1_scaffold_237_27
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27271..28488
DNA (1218bp) protein (406aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AKT7_9FIRM
L1_008_000M1_scaffold_237_28
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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28561..31134
DNA (2574bp) protein (858aa)
Putative translation elongation factor G n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ40_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:EDM98689.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
small GTP-binding protein domain
L1_008_000M1_scaffold_237_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31286..32620
DNA (1335bp) protein (445aa)
Efflux transporter RND family MFP subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T079_9FIRM
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDC66858.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L1_008_000M1_scaffold_237_30
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32632..33321
DNA (690bp) protein (230aa)
ABC transporter related protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UBU5_RUMA7
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ADU20687.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
Displaying items 1-30 of 67 in total

View Taxonomy