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L1_008_000M1_scaffold_306

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_306_1
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..211
DNA (210bp) protein (70aa)
Sigma-70, region 4 n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0N9E0_CLOSV
Sigma-70, region 4 {ECO:0000313|EMBL:EDS08759.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L1_008_000M1_scaffold_306_2
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

192..446
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0N9D9_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS08758.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L1_008_000M1_scaffold_306_3
unknown

Not on your lists

898..1068
DNA (171bp) protein (57aa)

This feature has no annotations

L1_008_000M1_scaffold_306_4
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1146..2657
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JC39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS31770.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_008_000M1_scaffold_306_5
Enterobacter sp. 35683, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2919..3335)
DNA (417bp) protein (139aa)
Uncharacterized protein n=4 Tax=Enterobacter cloacae complex RepID=U7CQ54_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJN13168.1}; TaxID=1619251 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35683.;"
L1_008_000M1_scaffold_306_6
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3475..4728)
DNA (1254bp) protein (418aa)
C-terminal peptidase (prc) (EC:3.4.21.102)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002FCA45D
Uncharacterized protein {ECO:0000313|EMBL:EWM52535.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
L1_008_000M1_scaffold_306_7
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4770..6152)
DNA (1383bp) protein (461aa)
Membrane proteins related to metalloendopeptidases n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H3B4_9FIRM
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CDE32697.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Membrane proteins related to metalloendopeptidases
L1_008_000M1_scaffold_306_8
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6208..7113)
DNA (906bp) protein (302aa)
Cell division protein FtsX n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H029_9FIRM
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Cell division protein
L1_008_000M1_scaffold_306_9
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7103..7786)
DNA (684bp) protein (228aa)
ftsE; cell division ATP-binding protein FtsE (EC:3.6.3.-)
Cell division ATP-binding protein FtsE n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MPH0_9FIRM
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:CDF01818.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L1_008_000M1_scaffold_306_10
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7851..8936)
DNA (1086bp) protein (362aa)
CdaR family transcriptional regulator n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37AC3
CdaR family transcriptional regulator {ECO:0000313|EMBL:EWM52539.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
transcriptional regulator, CdaR family
L1_008_000M1_scaffold_306_11
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9152..10918)
DNA (1767bp) protein (589aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA synthetase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37AC2
L1_008_000M1_scaffold_306_12
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10936..11361)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LC00_RUMC1
Domain of unknown function (DUF1934).
Uncharacterized protein {ECO:0000313|EMBL:CBL17145.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_306_13
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11365..12174)
DNA (810bp) protein (270aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
murI; Glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7ML77_9FIRM
L1_008_000M1_scaffold_306_14
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12188..13261)
DNA (1074bp) protein (358aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
D-alanine--D-alanine ligase n=2 Tax=Ruminococcus RepID=D4LBZ9_RUMC1
L1_008_000M1_scaffold_306_15
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13590..13739
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=4 Tax=Ruminococcus RepID=E6UFR4_RUMA7
rpmG; ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
L1_008_000M1_scaffold_306_16
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13756..14004
DNA (249bp) protein (83aa)
Protein translocase subunit SecE n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MQZ2_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
preprotein translocase, SecE subunit, bacterial
L1_008_000M1_scaffold_306_17
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14043..14573
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=2 Tax=Ruminococcus RepID=D4LBZ6_RUMC1
transcription antitermination protein nusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_306_18
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14667..15092
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FBQ5_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
LSU ribosomal protein L11P
L1_008_000M1_scaffold_306_19
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15214..15909
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002DFB74B
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
LSU ribosomal protein L1P
L1_008_000M1_scaffold_306_20
unknown

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16230..16430
DNA (201bp) protein (67aa)

This feature has no annotations

L1_008_000M1_scaffold_306_21
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16442..17125)
DNA (684bp) protein (228aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TFG9_9CLOT
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
sfsA; sugar fermentation stimulation protein
L1_008_000M1_scaffold_306_22
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17256..18098)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YV04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD65860.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
hypothetical protein
L1_008_000M1_scaffold_306_23
unknown

Not on your lists

18247..18369
DNA (123bp) protein (41aa)

This feature has no annotations

L1_008_000M1_scaffold_306_24
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18478..20052
DNA (1575bp) protein (525aa)
Resolvase N-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5S2_9FIRM
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CDE33557.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_008_000M1_scaffold_306_25
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20059..20643
DNA (585bp) protein (195aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MK37_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDF01005.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L1_008_000M1_scaffold_306_26
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20667..22028
DNA (1362bp) protein (454aa)
DNA repair protein radA n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AKH3_9FIRM
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
DNA repair protein RadA
L1_008_000M1_scaffold_306_27
Bacteroides pyogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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22281..22457
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Bacteroides pyogenes F0041 RepID=U2CLW8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:GAE21324.1}; TaxID=1235813 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides pyogenes JCM 10003.;"
hypothetical protein
L1_008_000M1_scaffold_306_28
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22470..23423
DNA (954bp) protein (318aa)
Putative repeat protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7ML04_9FIRM
Putative repeat protein {ECO:0000313|EMBL:CDF00437.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L1_008_000M1_scaffold_306_29
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23686..24714
DNA (1029bp) protein (343aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MJQ2_9FIRM
L1_008_000M1_scaffold_306_30
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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24874..27108
DNA (2235bp) protein (745aa)
Putative endoglucanase n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BJ68_9FIRM
Putative endoglucanase {ECO:0000313|EMBL:CDD65779.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
BNR/Asp-box repeat.
Displaying items 1-30 of 125 in total

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