ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

L1_008_000M1_scaffold_1324_14

Organism: dasL1_008_000M1_concoct_47_fa

near complete RP 48 / 55 BSCG 50 / 51 MC: 1 ASCG 15 / 38
Location: 11102..12763

Top 3 Functional Annotations

Value Algorithm Source
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.3
  • Coverage: 552.0
  • Bit_score: 833
  • Evalue 1.20e-238
Isopropylmalate/homocitrate/citramalate synthases (EC:2.3.3.13) similarity KEGG
DB: KEGG
  • Identity: 71.1
  • Coverage: 551.0
  • Bit_score: 810
  • Evalue 1.60e-232
2-isopropylmalate synthase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H014_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 72.3
  • Coverage: 552.0
  • Bit_score: 833
  • Evalue 8.20e-239

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Ruminococcus sp. CAG:403 → Ruminococcus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1662
ATGAAAAATTTTGAAAAGTACACAAGACAGTATTTTCCGGTCAAAAATCCTCCTATGAAATGGACTGAGAAGGATTATGTGGATCATGCTCCTATATGGTGCAGCGTTGATCTGAGAGACGGTAATCAGGCGCTTATTAATCCTATGACGCTTGATGAAAAGCTGGATTTCTTTAAATATCTTGTGAAAATTGGGTTTAAGGAAATTGAAGTTGGATTTCCGGCAGCTTCAGAAACAGAATATGAATTCTGCCGCGCGCTTATTGAAAAGGAGCTTATACCAGACGACGTTACGATACAGGTTCTTACTCAGTCAAGAGAGCATATTATAAAGAAAACCTTTGAGGCTCTCAAAGGCGCAAAAAATGTTATTGTACATCTTTATAATTCTACATCTCTGGCTCAGCGCGAACAGGTTTTTAGAAAAAGCAAAGAGGAAATTATAGATATTGCAGTAACCGGTGCAAGGCTTTGCAAAAGCTACAGGGAAAACGCCGTCGGCAATTACCGTTTTGAATATTCACCTGAAAGCTTTACGGGAACTGAGCCGGAATTTGCTCTTGAAATATGTAATGAAGTAATAAAGATTTGGGAACCGTCGCCGGAAAATAAGGTTATTATAAATCTTCCGGTTACAGTTTCGCATTCAATGCCTCATGTTTACGCGAATCAGGTAGAATATATGTGCGATAATCTGTTAAGCCGCGAAAATGTTATAGTCTCTCTCCATCCTCATAACGACAGAGGCTGTGCGGTCGCCGACAGTGAAATGGGTTTGCTTGCCGGCGCTGACAGAATAGAGGGAACGCTTTTCGGAAACGGAGAGAGAACCGGTAACGTGGATATTGTAACTTTGGGTATGAATATGTTTTCTCAGGGGGTGGATCCTCGGCTTAATTTTGAAAATATGCCTGAAATAACTGAAGTTTATGAGAGAGTTACCGGAATGAAGGTTTACGAACGTCAGCCTTACAGCGGTCAGCTTGTATTTGCAGCGTTCAGCGGCTCTCATCAGGACGCTATTGCAAAGGGTATGAAATGGCGTCAGGAGAAAAACTGCGAGCACTGGACGGTACCTTATCTGCCGATAGATCCGCAGGATGTGGGAAGGGTTTATGAAACCGACGTTATCAGAATTAACAGTCAGTCAGGAAAGGGAGGCATAGGATATATTCTGGAACAGCAGTTTGGAATAATCATGCCTCCGAAAATGAGAGAACCGTTCGGATATATGGTAAAGCATGTTTCAGATAACGCCCATCGTGAGCTTATGCCTTCAGAAGTGTATGACATATTTAAGGATATATTTATAAATAAGCAGTCCCCGGTTGCTTTAAAGGAAGCTCATTACGTTAAGAAAGATGGAATTGAAGCAGATGTGACGATTGAATATAACGGAAAGATTATGAACGAAAAAGCTCACGGCAACGGAAGACTTAACGCTGTCAGCAAAGCTTTGATGAATATACTTGGAATAAAATATGATTTGCACACATATACGGAGCATGCAATGGAGCAGGGAGATACGTCAAAGGCTGTTTCTTATGTAGGAATTAAAGACGAAAAGGGTAACGATTTCTGGGGAGTAGGTATAGAAACCGATATAATCGATTCTTCGCTTAAAGCGTTATTCAGCGCGGTAAACAATATGATTAATGTTTGA
PROTEIN sequence
Length: 554
MKNFEKYTRQYFPVKNPPMKWTEKDYVDHAPIWCSVDLRDGNQALINPMTLDEKLDFFKYLVKIGFKEIEVGFPAASETEYEFCRALIEKELIPDDVTIQVLTQSREHIIKKTFEALKGAKNVIVHLYNSTSLAQREQVFRKSKEEIIDIAVTGARLCKSYRENAVGNYRFEYSPESFTGTEPEFALEICNEVIKIWEPSPENKVIINLPVTVSHSMPHVYANQVEYMCDNLLSRENVIVSLHPHNDRGCAVADSEMGLLAGADRIEGTLFGNGERTGNVDIVTLGMNMFSQGVDPRLNFENMPEITEVYERVTGMKVYERQPYSGQLVFAAFSGSHQDAIAKGMKWRQEKNCEHWTVPYLPIDPQDVGRVYETDVIRINSQSGKGGIGYILEQQFGIIMPPKMREPFGYMVKHVSDNAHRELMPSEVYDIFKDIFINKQSPVALKEAHYVKKDGIEADVTIEYNGKIMNEKAHGNGRLNAVSKALMNILGIKYDLHTYTEHAMEQGDTSKAVSYVGIKDEKGNDFWGVGIETDIIDSSLKALFSAVNNMINV*