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L1_008_000M1_scaffold_1324

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1324_1
unknown

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3..170
DNA (168bp) protein (56aa)

This feature has no annotations

L1_008_000M1_scaffold_1324_2
Thermoanaerobacter siderophilus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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880..1116
DNA (237bp) protein (79aa)
Transcriptional regulator, AbrB family n=10 Tax=Thermoanaerobacter RepID=B0K127_THEPX
AbrB family transcriptional regulator
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:EIW00323.1}; TaxID=880478 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter siderophilus SR4.;"
L1_008_000M1_scaffold_1324_3
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1164..1835)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MR83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF03090.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L1_008_000M1_scaffold_1324_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1882..2976)
DNA (1095bp) protein (365aa)
Nucleoside recognition domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5V2_9FIRM
ylbJ; Sporulation integral membrane protein YlbJ
Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:CCO04685.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_008_000M1_scaffold_1324_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3065..3307
DNA (243bp) protein (81aa)
Putative sporulation protein YqfC n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JUA8_9FIRM
Putative sporulation protein YqfC {ECO:0000313|EMBL:ERJ89866.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
YabP family.
L1_008_000M1_scaffold_1324_6
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3313..4482
DNA (1170bp) protein (390aa)
Putative stage IV sporulation protein YqfD n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCN8_RUMC1
Putative stage IV sporulation protein YqfD.
Putative stage IV sporulation protein YqfD {ECO:0000313|EMBL:CBL17383.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_1324_7
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4616..5578
DNA (963bp) protein (321aa)
phosphate starvation protein PhoH n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37925
Phosphate starvation-inducible protein PhoH predicted ATPase {ECO:0000313|EMBL:CDF00464.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L1_008_000M1_scaffold_1324_8
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5581..6087
DNA (507bp) protein (169aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
metalloprotease n=1 Tax=Ruminococcus flavefaciens RepID=UPI0003645142
conserved hypothetical protein TIGR00043
L1_008_000M1_scaffold_1324_9
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6113..7006
DNA (894bp) protein (298aa)
GTPase Era n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MJB8_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
GTP-binding protein Era
L1_008_000M1_scaffold_1324_10
unknown

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7091..7252
DNA (162bp) protein (54aa)

This feature has no annotations

L1_008_000M1_scaffold_1324_11
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7206..7949
DNA (744bp) protein (248aa)
DNA repair protein RecO n=2 Tax=Ruminococcus RepID=D4LCP2_RUMC1
DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_1324_12
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7956..10331
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Endonuclease MutS2 n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MH96_9FIRM
MutS2 family protein
L1_008_000M1_scaffold_1324_13
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10340..10720
DNA (381bp) protein (127aa)
Glyoxalase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R0U6_9CLOT
Glyoxalase {ECO:0000313|EMBL:EPR10368.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
lactoylglutathione lyase-like lyase
L1_008_000M1_scaffold_1324_14
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11102..12763
DNA (1662bp) protein (554aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Isopropylmalate/homocitrate/citramalate synthases (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H014_9FIRM
L1_008_000M1_scaffold_1324_15
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12888..13769
DNA (882bp) protein (294aa)
Cohesin domain n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MN88_9FIRM
Cohesin domain {ECO:0000313|EMBL:CDF02544.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L1_008_000M1_scaffold_1324_16
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15176..15748)
DNA (573bp) protein (191aa)
TnpX site-specific recombinase family protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N2W8_9CLOT
TnpX site-specific recombinase family protein {ECO:0000313|EMBL:CDC05395.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L1_008_000M1_scaffold_1324_17
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16014..16847)
DNA (834bp) protein (278aa)
TnpX site-specific recombinase family protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N2W8_9CLOT
TnpX site-specific recombinase family protein {ECO:0000313|EMBL:CDC05395.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
recombinase
L1_008_000M1_scaffold_1324_18
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16951..17220)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NAQ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05394.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L1_008_000M1_scaffold_1324_19
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17405..18481)
DNA (1077bp) protein (359aa)
Plasmid recombination enzyme n=1 Tax=Clostridium leptum CAG:27 RepID=R6P0U1_9CLOT
Plasmid recombination enzyme {ECO:0000313|EMBL:CDC03572.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Plasmid recombination enzyme.
L1_008_000M1_scaffold_1324_20
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19467..20051)
DNA (585bp) protein (195aa)
Cytosine/adenosine deaminases n=1 Tax=Coprococcus catus GD/7 RepID=D4J739_9FIRM
Cytosine/adenosine deaminases
Cytosine/adenosine deaminases {ECO:0000313|EMBL:CBK80160.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_1324_21
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20142..20456)
DNA (315bp) protein (105aa)
Isochorismatase family protein {ECO:0000313|EMBL:EET60817.1}; EC=3.-.-.- {ECO:0000313|EMBL:EET60817.1};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Isochorismatase family protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LF78_9FIRM
cysteine hydrolase
L1_008_000M1_scaffold_1324_22
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20449..21597)
DNA (1149bp) protein (383aa)
MATE efflux family protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LF79_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EET60818.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
MATE efflux family protein
L1_008_000M1_scaffold_1324_23
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21996..22373)
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Ruminococcaceae RepID=R7ETS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE50368.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L1_008_000M1_scaffold_1324_24
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22790..23095
DNA (306bp) protein (102aa)
TraG family protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCP6_RUMAL
TraG family protein {ECO:0000313|EMBL:EGC02925.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
conjugal transfer protein
L1_008_000M1_scaffold_1324_25
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23329..23886)
DNA (558bp) protein (186aa)
GNAT family acetyltransferase (EC:2.3.1.128)
GCN5-related N-acetyltransferase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MP93_9FIRM
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CDF01577.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L1_008_000M1_scaffold_1324_26
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24302..24511
DNA (210bp) protein (70aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEI5_RUMC1
TrbL/VirB6 plasmid conjugal transfer protein.
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:CBL18030.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_1324_27
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24811..25038
DNA (228bp) protein (76aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEI5_RUMC1
TrbL/VirB6 plasmid conjugal transfer protein.
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:CBL18030.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
Displaying 27 items

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