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L1_008_000M1_scaffold_1003

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1003_1
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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95..1489
DNA (1395bp) protein (465aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TBN4_HELMI
tilS; tRNA(ile)-lysidine synthase
L1_008_000M1_scaffold_1003_2
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1482..2039
DNA (558bp) protein (186aa)
Hypoxanthine-guanine phosphoribosyltransferase n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R7L0_THETN
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KGG80627.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
Hpt; hypoxanthine-guanine phosphoribosyltransferase
L1_008_000M1_scaffold_1003_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2085..4013
DNA (1929bp) protein (643aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IC93_9FIRM
HflB3; ATP-dependent Zn protease
L1_008_000M1_scaffold_1003_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4118..4954
DNA (837bp) protein (279aa)
PHP domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKD3_9FIRM
PHP domain protein {ECO:0000313|EMBL:ERJ89959.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
PHP domain-containing protein
L1_008_000M1_scaffold_1003_5
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5027..6490
DNA (1464bp) protein (488aa)
VanW family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I8B4_9FIRM
VanW family protein {ECO:0000313|EMBL:CDE48124.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
VanW family protein
L1_008_000M1_scaffold_1003_6
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6582..6962
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VE28_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86169.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
endoribonuclease L-PSP
L1_008_000M1_scaffold_1003_7
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6984..8951
DNA (1968bp) protein (656aa)
fbp; fructose-1,6-bisphosphatase class 3 1 (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EF75_CLOPA
L1_008_000M1_scaffold_1003_8
unknown

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comp(8915..9133)
DNA (219bp) protein (73aa)

This feature has no annotations

L1_008_000M1_scaffold_1003_9
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9388..10065
DNA (678bp) protein (226aa)
HAD-superfamily hydrolase subfamily IA variant 1 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDI8_9FIRM
HAD-superfamily hydrolase subfamily IA variant 1 {ECO:0000313|EMBL:CDE48642.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
haloacid dehalogenase domain-containing protein hydrolase
L1_008_000M1_scaffold_1003_10
Bifidobacterium psychraerophilum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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10147..10422
DNA (276bp) protein (92aa)
UPF0237 protein BIFGAL_03052 n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NT95_9BIFI
UPF0237 protein BPSY_2133 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=218140 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium psychraerophilum.;"
hypothetical protein
L1_008_000M1_scaffold_1003_11
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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10435..11790
DNA (1356bp) protein (452aa)
UPF0210 protein HMPREF0372_03785 n=3 Tax=Clostridiales RepID=G9YW69_9FIRM
UPF0210 protein HMPREF0995_02047 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1003_12
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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11890..13698
DNA (1809bp) protein (603aa)
Oligopeptidase PepB n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CQP2_THEYO
Oligopeptidase PepB {ECO:0000313|EMBL:ERM92114.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. yonseiensis KB-1.;"
oligoendopeptidase F
L1_008_000M1_scaffold_1003_13
unknown

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13701..14042
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IA96_9FIRM
L1_008_000M1_scaffold_1003_14
unknown

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14059..14904
DNA (846bp) protein (282aa)

This feature has no annotations

L1_008_000M1_scaffold_1003_15

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14908..16188
DNA (1281bp) protein (427aa)
dTMP kinase {ECO:0000256|SAAS:SAAS00031932}; EC=2.7.4.9 {ECO:0000256|SAAS:SAAS00031932};; TaxID=1393376 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig11.;"
Thymidylate kinase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FWS9_9CLOT
thymidylate kinase
L1_008_000M1_scaffold_1003_16
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16192..17286
DNA (1095bp) protein (365aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I9M9_9FIRM
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
L1_008_000M1_scaffold_1003_17
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17286..17828
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L5I9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY74378.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
hypothetical protein
L1_008_000M1_scaffold_1003_18
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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17877..18761
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI0003804656
Uncharacterized protein {ECO:0000313|EMBL:KJS19453.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
penicillin-resistant dd-carboxypeptidase-like protein
L1_008_000M1_scaffold_1003_19
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18870..20435)
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M8F2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64147.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Acetyl xylan esterase
L1_008_000M1_scaffold_1003_20
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20536..21465)
DNA (930bp) protein (310aa)
N-acetylneuraminate lyase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJ68_9RHOB
N-acetylneuraminate lyase {ECO:0000313|EMBL:KKB12123.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
dihydrodipicolinate synthase/N-acetylneuraminate lyase
L1_008_000M1_scaffold_1003_21
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21521..22354)
DNA (834bp) protein (278aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JEC6_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EOS29497.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
ABC transporter permease
L1_008_000M1_scaffold_1003_22
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22369..23265)
DNA (897bp) protein (299aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IXZ7_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EOS23787.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_008_000M1_scaffold_1003_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23398..24663)
DNA (1266bp) protein (422aa)
ABC transporter, solute-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSB2_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EFB74398.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_008_000M1_scaffold_1003_24
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24925..25617
DNA (693bp) protein (231aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HNP1_9CLOT
HTH-type transcriptional regulator LutR {ECO:0000313|EMBL:KJJ68346.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
GntR family transcriptional regulator
L1_008_000M1_scaffold_1003_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25639..26340
DNA (702bp) protein (234aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
N-acylglucosamine-6-phosphate 2-epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=9 Tax=Clostridium RepID=G5HYR1_9CLOT
L1_008_000M1_scaffold_1003_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26356..27261
DNA (906bp) protein (302aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.2)
ROK family protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDG6_9FIRM
ROK family protein {ECO:0000313|EMBL:EDP20890.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_008_000M1_scaffold_1003_27
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27356..27853)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z234_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR71224.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L1_008_000M1_scaffold_1003_28
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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27914..28369
DNA (456bp) protein (152aa)
Transcriptional regulator MerR family n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0K7_9FIRM
Transcriptional regulator MerR family {ECO:0000313|EMBL:CCX73708.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_1003_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28468..30003
DNA (1536bp) protein (512aa)
ABC transporter ATP-binding protein n=2 Tax=Clostridium RepID=R6PFG2_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC22335.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter-like protein
L1_008_000M1_scaffold_1003_30

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30019..30666
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE64_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61618.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC transporter permease
Displaying 30 items

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