ggKbase home page

L1_008_000M1_scaffold_1039

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1039_1
unknown

Not on your lists

320..829
-----------------
DNA (510bp)
protein (170aa)

This feature has no annotations

L1_008_000M1_scaffold_1039_2
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1446..1592
-----------------
DNA (147bp)
protein (49aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GWJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26044.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative efflux protein, MATE family
L1_008_000M1_scaffold_1039_3
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(1656..2600)
-----------------
DNA (945bp)
protein (315aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
tRNA-dihydrouridine synthase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HBZ4_9FIRM
dihydrouridine synthase DuS
L1_008_000M1_scaffold_1039_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2640..3950)
-----------------
DNA (1311bp)
protein (437aa)
Recombination protein MgsA n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDK4_9FIRM
Recombination protein MgsA {ECO:0000313|EMBL:CDE48657.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ATPase AAA
L1_008_000M1_scaffold_1039_5
unknown

Not on your lists

4130..4861
-----------------
DNA (732bp)
protein (244aa)

This feature has no annotations

L1_008_000M1_scaffold_1039_6
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4997..5797
-----------------
DNA (801bp)
protein (267aa)
SH3 domain protein n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1LV34_9FIRM
SH3 domain protein {ECO:0000313|EMBL:EHO52687.1}; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
L1_008_000M1_scaffold_1039_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5998..7062
-----------------
DNA (1065bp)
protein (355aa)
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase n=2 Tax=Clostridiales RepID=U2CIR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF53278.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Penicillin V acylase-like amidase
L1_008_000M1_scaffold_1039_8
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7424..10552
-----------------
DNA (3129bp)
protein (1043aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I703_9FIRM
L1_008_000M1_scaffold_1039_9
Paenibacillus sp. D9, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10562..11875
-----------------
DNA (1314bp)
protein (438aa)
Putative alpha-galactosidase n=1 Tax=Paenibacillus sp. P22 RepID=T2LSI3_9BACL
Uncharacterized protein {ECO:0000313|EMBL:KKC48522.1}; TaxID=665792 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. D9.;"
Alpha-galactosidase/6-phospho-beta-glucosidase family 4 of glycosyl hydrolase
L1_008_000M1_scaffold_1039_10
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12132..13001
-----------------
DNA (870bp)
protein (290aa)
Methyltransferase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VJY3_CLOSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC68440.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_008_000M1_scaffold_1039_11
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13003..13716
-----------------
DNA (714bp)
protein (238aa)
Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R133_9CLOT
Pseudouridine synthase {ECO:0000313|EMBL:EPR11711.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
23S RNA-specific pseudouridylate synthase
L1_008_000M1_scaffold_1039_12
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14000..15934
-----------------
DNA (1935bp)
protein (645aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IAT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE49014.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ErfK/YbiS/YcfS/YnhG family protein
L1_008_000M1_scaffold_1039_13
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16143..16682
-----------------
DNA (540bp)
protein (180aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TYU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC73056.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
putative membrane protein
L1_008_000M1_scaffold_1039_14
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16755..18137
-----------------
DNA (1383bp)
protein (461aa)
TrkH family potassium uptake protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N0I4_9FIRM
TrkH family potassium uptake protein {ECO:0000313|EMBL:EOS76799.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
TrkH family potassium uptake protein
L1_008_000M1_scaffold_1039_15
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18469..19119
-----------------
DNA (651bp)
protein (217aa)
Trk system potassium uptake protein TrkA n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JDL0_9FIRM
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:EOS32096.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
TrkA-N domain-containing protein
L1_008_000M1_scaffold_1039_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19429..20442
-----------------
DNA (1014bp)
protein (338aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
3-deoxy-7-phosphoheptulonate synthase n=3 Tax=Clostridiales RepID=G9YPU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF57113.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L1_008_000M1_scaffold_1039_17
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20547..21425
-----------------
DNA (879bp)
protein (293aa)
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC:1.3.1.12 1.3.1.43)
Prephenate dehydrogenase n=3 Tax=Clostridiales RepID=G9YPU9_9FIRM
Prephenate dehydrogenase {ECO:0000313|EMBL:ERI75328.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L1_008_000M1_scaffold_1039_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21626..22693
-----------------
DNA (1068bp)
protein (356aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
3-dehydroquinate synthase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IBW4_9FIRM
3-dehydroquinate synthase
L1_008_000M1_scaffold_1039_19
Synergistes sp. 3_1_syn1, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

22883..24172
-----------------
DNA (1290bp)
protein (430aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=457415 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes sp. 3_1_syn1.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Synergistes sp. 3_1_syn1 RepID=G9PWA0_9BACT
L1_008_000M1_scaffold_1039_20
Acidaminococcus fermentans, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24169..25305
-----------------
DNA (1137bp)
protein (379aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=591001 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4).;"
Chorismate synthase n=1 Tax=Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) RepID=D2RLL4_ACIFV
L1_008_000M1_scaffold_1039_21
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25421..26533
-----------------
DNA (1113bp)
protein (371aa)
chorismate mutase (EC:4.2.1.51)
Chorismate mutase {ECO:0000313|EMBL:ADL50113.1}; EC=4.2.1.51 {ECO:0000313|EMBL:ADL50113.1};; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
Chorismate mutase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SPR4_CLOC7
L1_008_000M1_scaffold_1039_22
Paenibacillus sp. oral taxon 786, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26526..27035
-----------------
DNA (510bp)
protein (170aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=621372 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. oral taxon 786 str. D14.;"
Shikimate kinase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J261_9BACL
Shikimate 5-dehydrogenase
L1_008_000M1_scaffold_1039_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27316..28563
-----------------
DNA (1248bp)
protein (416aa)
Membrane bound O-acyl transferase, MBOAT family protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LSE1_CLOB8
MBOAT, membrane-bound O-acyltransferase family protein {ECO:0000313|EMBL:AIY81639.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
membrane bound O-acyl transferase, MBOAT family protein
L1_008_000M1_scaffold_1039_24
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28688..29878
-----------------
DNA (1191bp)
protein (397aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N4P3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78018.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
hypothetical protein
Displaying 24 items

View Taxonomy