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L1_008_000M1_scaffold_1261

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1261_1
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..138)
DNA (138bp) protein (46aa)
TufB; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu 2 n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=EFTU2_PELTS
Elongation factor Tu 2 {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu 2 {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
L1_008_000M1_scaffold_1261_2
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(468..1106)
DNA (639bp) protein (213aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I4K4_9FIRM
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDE46188.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
RNA polymerase sigma-30 subunit SigH
L1_008_000M1_scaffold_1261_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1103..1612)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I2R0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE46189.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L1_008_000M1_scaffold_1261_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1614..2333)
DNA (720bp) protein (240aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
rRNA methylase putative group 3 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I3I0_9FIRM
rRNA methylase putative group 3 {ECO:0000313|EMBL:CDE46190.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L1_008_000M1_scaffold_1261_5
Bos mutus, Bos, Mammalia, Chordata, Metazoa

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comp(2363..2791)
DNA (429bp) protein (143aa)
Uncharacterized protein (Fragment) n=1 Tax=Bos mutus RepID=L8I5L6_9CETA
Uncharacterized protein {ECO:0000313|EMBL:ELR51503.1}; Flags: Fragment;; TaxID=72004 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos.;" source="Bos mutus.;"
L1_008_000M1_scaffold_1261_6
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2830..3552)
DNA (723bp) protein (241aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Thymidylate synthase ThyX n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I3Y9_9FIRM
thymidylate synthase, flavin-dependent
L1_008_000M1_scaffold_1261_7
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3528..3974)
DNA (447bp) protein (149aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Mini-ribonuclease 3 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I6M9_9FIRM
ribonuclease III
L1_008_000M1_scaffold_1261_8
unknown

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comp(4172..5719)
DNA (1548bp) protein (516aa)

This feature has no annotations

L1_008_000M1_scaffold_1261_9
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5850..7517)
DNA (1668bp) protein (556aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Dihydroxy-acid dehydratase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUL3_CLOCD
dihydroxy-acid dehydratase
L1_008_000M1_scaffold_1261_10
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7519..8523)
DNA (1005bp) protein (335aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KA54_9FIRM
L1_008_000M1_scaffold_1261_11
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8719..9246)
DNA (528bp) protein (176aa)
Acetolactate synthase, small subunit n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XIL6_CALS8
acetolactate synthase small subunit
Acetolactate synthase, small subunit {ECO:0000313|EMBL:ABP66751.2}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
L1_008_000M1_scaffold_1261_12
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9264..10973)
DNA (1710bp) protein (570aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
acetolactate synthase large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IF73_9FIRM
L1_008_000M1_scaffold_1261_13
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11383..12177)
DNA (795bp) protein (265aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I7H8_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDE46477.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
cell wall hydrolase/autolysin
L1_008_000M1_scaffold_1261_14
unknown

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comp(12946..14199)
DNA (1254bp) protein (418aa)

This feature has no annotations

L1_008_000M1_scaffold_1261_15
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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14300..14551
DNA (252bp) protein (84aa)
DNA-binding helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CWB5_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCX72168.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
XRE family transcriptional regulator
L1_008_000M1_scaffold_1261_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14692..15159
DNA (468bp) protein (156aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNT4_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD79342.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L1_008_000M1_scaffold_1261_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15235..15876
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KLJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX51111.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_1261_18
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16074..16988)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6KY87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB67007.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L1_008_000M1_scaffold_1261_19
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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17434..17622
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QHY6_9FIRM
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
L1_008_000M1_scaffold_1261_20
unknown

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comp(17973..18314)
DNA (342bp) protein (114aa)

This feature has no annotations

L1_008_000M1_scaffold_1261_21
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18384..18929)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Saccharibacillus kuerlensis RepID=UPI000364C7F5
ribosomal subunit interface protein
Ribosomal subunit interface protein {ECO:0000313|EMBL:EMS70977.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
L1_008_000M1_scaffold_1261_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19066..19653)
DNA (588bp) protein (196aa)
Hydrolase, NUDIX family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55359.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
NUDIX hydrolase
L1_008_000M1_scaffold_1261_23
unknown

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comp(19790..21388)
DNA (1599bp) protein (533aa)

This feature has no annotations

L1_008_000M1_scaffold_1261_24
unknown

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comp(21584..21808)
DNA (225bp) protein (75aa)

This feature has no annotations

L1_008_000M1_scaffold_1261_25
unknown

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comp(21821..22015)
DNA (195bp) protein (65aa)

This feature has no annotations

L1_008_000M1_scaffold_1261_26
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22034..23815)
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JGM8_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ82983.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_008_000M1_scaffold_1261_27
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23812..24153)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:349 RepID=R6WI53_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD09060.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
hypothetical protein X
L1_008_000M1_scaffold_1261_28
unknown

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24429..26102
DNA (1674bp) protein (558aa)

This feature has no annotations

L1_008_000M1_scaffold_1261_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26161..26619)
DNA (459bp) protein (153aa)
Transcriptional regulator, AsnC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJT3_9FIRM
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EFB77031.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator
L1_008_000M1_scaffold_1261_30
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26773..27330)
DNA (558bp) protein (186aa)
Chromate transport protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NUS2_9CLOT
Chromate transport protein {ECO:0000313|EMBL:CDC09981.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Chromate transport protein ChrA
Displaying items 1-30 of 45 in total

View Taxonomy