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L1_008_000M1_scaffold_1662

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1662_1
unknown

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2..88
-----------------
DNA (87bp)
protein (29aa)

This feature has no annotations

L1_008_000M1_scaffold_1662_2
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(245..727)
-----------------
DNA (483bp)
protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VRB3_CLOSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC69317.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_008_000M1_scaffold_1662_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(813..2195)
-----------------
DNA (1383bp)
protein (461aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I734_9FIRM
L1_008_000M1_scaffold_1662_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2400..3242
-----------------
DNA (843bp)
protein (281aa)
Pur operon repressor n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IK15_9FIRM
Pur operon repressor {ECO:0000313|EMBL:CDE50947.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
pur operon repressor
L1_008_000M1_scaffold_1662_5
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3527..4096
-----------------
DNA (570bp)
protein (190aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJG0_9FIRM
L1_008_000M1_scaffold_1662_6
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4335..6998
-----------------
DNA (2664bp)
protein (888aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Transcription-repair-coupling factor n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIZ9_9FIRM
transcription-repair coupling factor
L1_008_000M1_scaffold_1662_7
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6998..7891
-----------------
DNA (894bp)
protein (298aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Transcription-repair-coupling factor n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIZ9_9FIRM
transcription-repair coupling factor
L1_008_000M1_scaffold_1662_8
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8674..11475
-----------------
DNA (2802bp)
protein (934aa)
amino acid-binding domain sensor hybrid histidine kinase (EC:2.7.13.3)
Sensor histidine kinase/response regulator n=1 Tax=Clostridium sp. D5 RepID=F0YVP3_9CLOT
Sensor histidine kinase/response regulator {ECO:0000313|EMBL:EGB94961.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_008_000M1_scaffold_1662_9
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11615..12988)
-----------------
DNA (1374bp)
protein (458aa)
Transporter n=1 Tax=Clostridium sp. CAG:510 RepID=R6CSS4_9CLOT
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
Na+-dependent transporters of the SNF family
L1_008_000M1_scaffold_1662_10
Treponema maltophilum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(13222..15123)
-----------------
DNA (1902bp)
protein (634aa)
Flavocytochrome c n=1 Tax=Treponema maltophilum ATCC 51939 RepID=S3K0P1_TREMA
Flavocytochrome c {ECO:0000313|EMBL:EPF31808.1}; TaxID=1125699 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema maltophilum ATCC 51939.;"
flavocytochrome c
L1_008_000M1_scaffold_1662_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15265..16077)
-----------------
DNA (813bp)
protein (271aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42885.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
MerR family transcriptional regulator
L1_008_000M1_scaffold_1662_12
Solobacterium moorei, Solobacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16245..16460)
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI0003051E0D
FMN-binding domain protein {ECO:0000313|EMBL:EFW25405.1}; TaxID=706433 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium.;" source="Solobacterium moorei F0204.;"
L1_008_000M1_scaffold_1662_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16636..17700
-----------------
DNA (1065bp)
protein (355aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00013344}; EC=2.4.2.21 {ECO:0000256|SAAS:SAAS00013328};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A5_9FIRM
L1_008_000M1_scaffold_1662_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17694..18227
-----------------
DNA (534bp)
protein (178aa)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (EC:2.7.1.156 2.7.7.62)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:CBK97965.1}; EC=2.7.1.156 {ECO:0000313|EMBL:CBK97965.1};; EC=2.7.7.62 {ECO:0000313|EMBL:CBK97965.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K372_9FIRM
L1_008_000M1_scaffold_1662_15

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18214..18963
-----------------
DNA (750bp)
protein (250aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cobalamin-5'-phosphate synthase (EC:2.7.8.26)
Cobalamin synthase n=1 Tax=uncultured bacterium RepID=S6CQ57_9BACT
L1_008_000M1_scaffold_1662_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18960..19277
-----------------
DNA (318bp)
protein (106aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95639.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase
L1_008_000M1_scaffold_1662_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19271..19867
-----------------
DNA (597bp)
protein (199aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
Phosphoglycerate mutase family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A1_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EEU95638.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L1_008_000M1_scaffold_1662_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19864..20823
-----------------
DNA (960bp)
protein (320aa)
adenosylcobinamide-phosphate synthase (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K375_9FIRM
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_008_000M1_scaffold_1662_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20827..21879
-----------------
DNA (1053bp)
protein (351aa)
L-threonine-O-3-phosphate decarboxylase (EC:4.1.1.81)
Putative threonine-phosphate decarboxylase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJL3_9FIRM
Putative threonine-phosphate decarboxylase {ECO:0000313|EMBL:EFQ06616.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L1_008_000M1_scaffold_1662_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21876..23357
-----------------
DNA (1482bp)
protein (494aa)
adenosylcobyric acid synthase (glutamine-hydrolysing) (EC:6.3.5.10)
Cobyric acid synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H998_9FIRM
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L1_008_000M1_scaffold_1662_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23704..24927
-----------------
DNA (1224bp)
protein (408aa)
6-phosphofructokinase (EC:2.7.1.11)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
6-phosphofructokinase n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KBN9_9FIRM
L1_008_000M1_scaffold_1662_22
Sphaerochaeta globosa, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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25311..25895
-----------------
DNA (585bp)
protein (195aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RVQ3_SPHGB
tripartite ATP-independent periplasmic transporter DctQ component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADY13045.1}; TaxID=158189 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy); (Spirochaeta sp. (strain Buddy)).;"
L1_008_000M1_scaffold_1662_23
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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25892..27202
-----------------
DNA (1311bp)
protein (437aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LIB7_TREBD
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:AEE16158.1}; Flags: Precursor;; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
Displaying 23 items

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