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L1_008_000M1_scaffold_2332

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2332_1
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7..240)
DNA (234bp) protein (78aa)
Sporulation protein YlmC/YmxH family n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ETU8_9FIRM
Sporulation protein YlmC/YmxH family {ECO:0000313|EMBL:CDE05881.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
ylmC; YlmC/YmxH family sporulation protein
L1_008_000M1_scaffold_2332_2
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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365..1138
DNA (774bp) protein (258aa)
RNA polymerase sigma factor n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IFC6_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
RNA polymerase sigma 28 subunit SigG
L1_008_000M1_scaffold_2332_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1135..1935)
DNA (801bp) protein (267aa)
Stage II sporulation protein P n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I340_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:CDE46289.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
stage II sporulation protein P
L1_008_000M1_scaffold_2332_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2133..2963)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IKD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51941.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L1_008_000M1_scaffold_2332_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3048..4082)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8CEM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25440.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted membrane protein
L1_008_000M1_scaffold_2332_6
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4149..5525)
DNA (1377bp) protein (459aa)
MATE efflux family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVE9_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CDC03490.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
putative efflux protein, MATE family
L1_008_000M1_scaffold_2332_7
unknown

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comp(5762..6268)
DNA (507bp) protein (169aa)

This feature has no annotations

L1_008_000M1_scaffold_2332_8
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6270..7208)
DNA (939bp) protein (313aa)
Outer membrane protein and related peptidoglycan-associated (Lipo)proteins n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LTN4_9FIRM
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:ETP71719.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
Outer membrane protein and related peptidoglycan-associated (lipo)proteins
L1_008_000M1_scaffold_2332_9
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7212..8771)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IG49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE50283.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L1_008_000M1_scaffold_2332_10
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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9069..9527
DNA (459bp) protein (153aa)
Transcriptional regulator n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KAR0_HALHC
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGB41630.1}; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source="Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1).;"
L1_008_000M1_scaffold_2332_11
unknown

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comp(9821..10972)
DNA (1152bp) protein (384aa)

This feature has no annotations

L1_008_000M1_scaffold_2332_12
unknown

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comp(10989..12254)
DNA (1266bp) protein (422aa)

This feature has no annotations

L1_008_000M1_scaffold_2332_13
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12241..12762)
DNA (522bp) protein (174aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IB31_9FIRM
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDE48760.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ECF subfamily RNA polymerase sigma-24 subunit
L1_008_000M1_scaffold_2332_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12877..14787)
DNA (1911bp) protein (637aa)
Polysaccharide biosynthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW6_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EFB76414.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polysaccharide biosynthesis protein CapD
Displaying 14 items

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