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L1_008_000M1_scaffold_2623

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2623_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(324..1004)
DNA (681bp) protein (227aa)
Uncharacterized domain HDIG n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z200_9CLOT
Uncharacterized domain HDIG {ECO:0000313|EMBL:CDD40215.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
uncharacterized domain HDIG
L1_008_000M1_scaffold_2623_2
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

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comp(1001..2335)
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Signal transduction histidine kinase n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5QI49_9FIRM
L1_008_000M1_scaffold_2623_3
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2448..3116)
DNA (669bp) protein (223aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Clostridium sp. CAG:58 RepID=R6RAB6_9CLOT
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDC44815.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_2623_4
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3122..4921)
DNA (1800bp) protein (600aa)
Na/Pi-cotransporter n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HB99_9FIRM
Na/Pi-cotransporter {ECO:0000313|EMBL:CDE36929.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Na/Pi-cotransporter
L1_008_000M1_scaffold_2623_5
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5124..5813)
DNA (690bp) protein (230aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HD86_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
phosphate uptake regulator, PhoU
L1_008_000M1_scaffold_2623_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5936..6691)
DNA (756bp) protein (252aa)
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) n=4 Tax=Roseburia RepID=D4KK84_9FIRM
L1_008_000M1_scaffold_2623_7
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6698..7531)
DNA (834bp) protein (278aa)
Phosphate ABC transporter, permease protein PstA n=2 Tax=Roseburia RepID=C0G049_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30577.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L1_008_000M1_scaffold_2623_8
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7528..8406)
DNA (879bp) protein (293aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Eubacterium RepID=C0EUJ3_9FIRM
Phosphate ABC transporter permease protein PstC {ECO:0000313|EMBL:CDB18448.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
phosphate ABC transporter permease PstC
L1_008_000M1_scaffold_2623_9
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8461..9324)
DNA (864bp) protein (288aa)
Putative Phosphate-binding protein PstS 2 n=2 Tax=Coprococcus RepID=C0B4Z2_9FIRM
Putative Phosphate-binding protein PstS 2 {ECO:0000313|EMBL:CDB84263.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
hypothetical protein
L1_008_000M1_scaffold_2623_10
unknown

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9663..10316
DNA (654bp) protein (218aa)

This feature has no annotations

L1_008_000M1_scaffold_2623_11
unknown

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10340..11140
DNA (801bp) protein (267aa)

This feature has no annotations

L1_008_000M1_scaffold_2623_12
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11216..11602)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IA55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48744.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L1_008_000M1_scaffold_2623_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11760..13070)
DNA (1311bp) protein (437aa)
Aspartyl/asparaginyl-tRNA synthetases (EC:6.1.1.12)
Aspartyl/asparaginyl-tRNA synthetases n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HV14_9FIRM
Aspartyl/asparaginyl-tRNA synthetases {ECO:0000313|EMBL:CDB41733.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Displaying 13 items

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