ggKbase home page

L1_008_000M1_scaffold_585

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_585_1
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..1105
DNA (1104bp) protein (368aa)
protein-(glutamine-N5) methyltransferase n=1 Tax=Clostridium beijerinckii RepID=UPI0002DF1DC3
HemK family modification methylase {ECO:0000313|EMBL:AJG97105.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
HemK family modification methylase
L1_008_000M1_scaffold_585_2
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1102..1935
DNA (834bp) protein (278aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
Release factor glutamine methyltransferase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WV32_GEOS8
protein-(glutamine-N5) methyltransferase
L1_008_000M1_scaffold_585_3
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1993..3072
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZX11_MAHA5
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L1_008_000M1_scaffold_585_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3077..4108
DNA (1032bp) protein (344aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IFB4_9FIRM
translation factor SUA5
L1_008_000M1_scaffold_585_5
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4105..4596
DNA (492bp) protein (164aa)
G:T/U mismatch-specific DNA glycosylase (EC:3.2.2.-)
Uracil DNA glycosylase superfamily protein n=1 Tax=Desulfosporosinus sp. OT RepID=G2G0N1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KCZ59148.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantica.;"
L1_008_000M1_scaffold_585_6
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4680..6008
DNA (1329bp) protein (443aa)
deoA; thymidine phosphorylase (EC:2.4.2.4)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJ68_9FIRM
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:CDE50642.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L1_008_000M1_scaffold_585_7
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6213..8009
DNA (1797bp) protein (599aa)
ABC transporter related n=1 Tax=Clostridium sp. CAG:242 RepID=R6D3K7_9CLOT
ABC transporter related {ECO:0000313|EMBL:CDA78691.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ABC transporter ATP-binding protein/permease
L1_008_000M1_scaffold_585_8
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8006..9814
DNA (1809bp) protein (603aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BMN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA62209.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
ABC transporter
L1_008_000M1_scaffold_585_9
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9980..11332
DNA (1353bp) protein (451aa)
Ig domain protein group 2 domain protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7HV21_9CLOT
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:CDE42798.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
Rhs family protein
L1_008_000M1_scaffold_585_10
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11652..13415
DNA (1764bp) protein (588aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Threonine--tRNA ligase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7II00_9FIRM
hypothetical protein
L1_008_000M1_scaffold_585_11
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13477..15048)
DNA (1572bp) protein (524aa)
Extracellular solute-binding protein family 5 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJP1_9FIRM
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:CDE51830.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
dipeptide ABC transporter periplasmic protein
L1_008_000M1_scaffold_585_12
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15060..16454)
DNA (1395bp) protein (465aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
coaE; dephospho-CoA kinase CoaE (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LG62_THEPS
L1_008_000M1_scaffold_585_13

Not on your lists

comp(16757..19315)
DNA (2559bp) protein (853aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=1393678 species="Bacteria; environmental samples.;" source="uncultured bacterium Contigcl_8.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AMR1_9CLOT
L1_008_000M1_scaffold_585_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19614..19958)
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7G592_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57797.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Hpt domain.
L1_008_000M1_scaffold_585_15
Selenomonas sp. CM52, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20190..21107
DNA (918bp) protein (306aa)
Periplasmic solute-binding family protein n=1 Tax=Selenomonas sp. CM52 RepID=J6I750_9FIRM
Periplasmic solute-binding family protein {ECO:0000313|EMBL:EJU28863.1}; TaxID=936381 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. CM52.;"
ABC-type metal ion transporter, periplasmic subunit
L1_008_000M1_scaffold_585_16
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21104..21913
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IG97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE50338.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
znuC; putative ABC transporter ATP-binding protein
L1_008_000M1_scaffold_585_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21910..22743
DNA (834bp) protein (278aa)
Manganese/zinc/iron chelate ABC transporter family permease protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IFW9_9FIRM
Manganese/zinc/iron chelate ABC transporter family permease protein {ECO:0000313|EMBL:CDE50336.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ABC transporter permease
L1_008_000M1_scaffold_585_18
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22869..23723
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JUM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE67331.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
hypothetical protein
L1_008_000M1_scaffold_585_19
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23720..24469
DNA (750bp) protein (250aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Coprococcus catus GD/7 RepID=D4J9J5_9FIRM
DnaJ-class molecular chaperone with C-terminal Zn finger domain
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CBK81016.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_585_20
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24792..25568
DNA (777bp) protein (259aa)
RNA methyltransferase TrmH family group 3 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I5A3_9FIRM
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CDE46795.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
rRNA methyltransferase
L1_008_000M1_scaffold_585_21
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25581..25832
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KKF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67330.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L1_008_000M1_scaffold_585_22
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

25893..26384
DNA (492bp) protein (164aa)
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine ammonia-lyase {ECO:0000313|EMBL:ADL08534.1}; EC=4.3.1.19 {ECO:0000313|EMBL:ADL08534.1};; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
L-threonine ammonia-lyase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYW0_THEOJ
L1_008_000M1_scaffold_585_23
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26397..27089
DNA (693bp) protein (231aa)
ilvA; K01754 threonine dehydratase (EC:4.3.1.19)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PCT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC21340.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
L1_008_000M1_scaffold_585_24
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27717..28475
DNA (759bp) protein (253aa)
Bacterial sugar transferase n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KP13_9CLOT
Bacterial sugar transferase {ECO:0000313|EMBL:CDB63867.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Sugar transferases involved in lipopolysaccharide synthesis
L1_008_000M1_scaffold_585_25
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28732..30234
DNA (1503bp) protein (501aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Coprococcus catus GD/7 RepID=D4JB32_9FIRM
Nucleotidyltransferase/DNA polymerase involved in DNA repair
Nucleotidyltransferase/DNA polymerase involved in DNA repair {ECO:0000313|EMBL:CBK81553.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_585_26
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

30231..30632
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TSZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC76528.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L1_008_000M1_scaffold_585_27
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30713..31576
DNA (864bp) protein (288aa)
Zn-dependent hydrolases including glyoxylases n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EV45_9FIRM
Zn-dependent hydrolases including glyoxylases {ECO:0000313|EMBL:CDE05362.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
Zn-dependent hydrolases, including glyoxylases
L1_008_000M1_scaffold_585_28
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

31573..32184
DNA (612bp) protein (204aa)
L-2-amino-thiazoline-4-carboxylic acid hydrolase n=1 Tax=Firmicutes bacterium CAG:534 RepID=R7AW05_9FIRM
L-2-amino-thiazoline-4-carboxylic acid hydrolase {ECO:0000313|EMBL:CDD47927.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
hypothetical protein
L1_008_000M1_scaffold_585_29

Not on your lists

32181..32966
DNA (786bp) protein (262aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SGH5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC56688.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_585_30
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32963..33895
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EKW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE03549.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
BAAT / Acyl-CoA thioester hydrolase C terminal.
Displaying items 1-30 of 38 in total

View Taxonomy