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L1_008_000M1_scaffold_1399

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1399_1
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(1..786)
DNA (786bp) protein (262aa)
probableO-sialoglycoprotein endopeptidase (EC:3.4.24.57)
Metallohydrolase glycoprotease/Kae1 family n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ILX8_9FIRM
Metallohydrolase glycoprotease/Kae1 family {ECO:0000313|EMBL:CCY41319.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1399_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(783..1232)
DNA (450bp) protein (150aa)
N utilization substance protein B homolog n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IGP7_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
nusB; antitermination protein NusB
L1_008_000M1_scaffold_1399_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(1349..1732)
DNA (384bp) protein (128aa)
Alkaline shock protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IX03_9FIRM
Alkaline shock protein {ECO:0000313|EMBL:CCY41317.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L1_008_000M1_scaffold_1399_4
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(1802..2359)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LTT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87049.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
spoIIIAH; putative stage III sporulation protein AH
L1_008_000M1_scaffold_1399_5
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(2371..2841)
DNA (471bp) protein (157aa)
Stage III sporulation protein AG n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ILX3_9FIRM
Stage III sporulation protein AG {ECO:0000313|EMBL:CCY41314.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
spoIIIAG; putative stage III sporulation protein AG
L1_008_000M1_scaffold_1399_6
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(2883..3365)
DNA (483bp) protein (161aa)
Putative stage III sporulation protein AF n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IGP2_9FIRM
Putative stage III sporulation protein AF {ECO:0000313|EMBL:CCY41313.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1399_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(3362..4459)
DNA (1098bp) protein (366aa)
Stage III sporulation protein AE n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MMR3_9FIRM
Stage III sporulation protein AE {ECO:0000313|EMBL:CDB87052.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
spoIIIAE; putative stage III sporulation protein AE
L1_008_000M1_scaffold_1399_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(4456..4851)
DNA (396bp) protein (132aa)
Putative stage III sporulation protein AD n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LHY4_9FIRM
Putative stage III sporulation protein AD {ECO:0000313|EMBL:CDB87053.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
spoIIIAD; putative stage III sporulation protein AD
L1_008_000M1_scaffold_1399_9
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(4854..5048)
DNA (195bp) protein (65aa)
Stage III sporulation protein AC n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IWZ2_9FIRM
Stage III sporulation protein AC {ECO:0000313|EMBL:CCY41307.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
spoIIIAC; stage III sporulation protein AC
L1_008_000M1_scaffold_1399_10
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(5051..5566)
DNA (516bp) protein (172aa)
Stage III sporulation protein AB SpoIIIAB n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LMJ0_9FIRM
Stage III sporulation protein AB SpoIIIAB {ECO:0000313|EMBL:CDB87055.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_1399_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(5563..6402)
DNA (840bp) protein (280aa)
Stage III sporulation protein AA n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IGN2_9FIRM
Stage III sporulation protein AA {ECO:0000313|EMBL:CCY41303.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
stage III sporulation protein AA
L1_008_000M1_scaffold_1399_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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6573..7316
DNA (744bp) protein (248aa)
TIGR00268 family protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YS43_9FIRM
TIGR00268 family protein {ECO:0000313|EMBL:EHM46647.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L1_008_000M1_scaffold_1399_13
Synergistes sp. 3_1_syn1, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

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7319..8071
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Synergistes sp. 3_1_syn1 RepID=G9PSK9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHL70869.1}; TaxID=457415 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes sp. 3_1_syn1.;"
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
L1_008_000M1_scaffold_1399_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8175..9338
DNA (1164bp) protein (388aa)
UPF0272 protein HMPREF0372_02351 n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YS45_9FIRM
UPF0272 protein HMPREF9460_02642 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
conserved hypothetical protein TIGR00299
L1_008_000M1_scaffold_1399_15
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(9427..10308)
DNA (882bp) protein (294aa)
Tyrosine recombinase XerC n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LP52_9FIRM
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
xerD; tyrosine recombinase XerD
L1_008_000M1_scaffold_1399_16
unknown

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comp(10807..11205)
DNA (399bp) protein (133aa)

This feature has no annotations

L1_008_000M1_scaffold_1399_17
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists


comp(11549..12565)
DNA (1017bp) protein (339aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
gcp; O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MP88_9FIRM
L1_008_000M1_scaffold_1399_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(12562..13008)
DNA (447bp) protein (149aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IZU2_9FIRM
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:CCY42237.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ribosomal-protein-alanine acetyltransferase
L1_008_000M1_scaffold_1399_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(13008..15617)
DNA (2610bp) protein (870aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IZP9_9FIRM
L1_008_000M1_scaffold_1399_20
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(15742..17193)
DNA (1452bp) protein (484aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJI8_9FIRM
L1_008_000M1_scaffold_1399_21
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(17210..17824)
DNA (615bp) protein (205aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
cysE; Serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MP83_9FIRM
L1_008_000M1_scaffold_1399_22
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(18107..18628)
DNA (522bp) protein (174aa)
pgsA; phosphatidylglycerophosphate synthase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IH78_9FIRM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CCY41488.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1399_23
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(18636..19988)
DNA (1353bp) protein (451aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IMH4_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1399_24
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(19985..20635)
DNA (651bp) protein (217aa)
Regulatory protein RecX n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LVD2_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
recX; regulatory protein RecX
L1_008_000M1_scaffold_1399_25
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists


comp(20625..21725)
DNA (1101bp) protein (367aa)
Protein RecA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJI5_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
recA; RecA protein
L1_008_000M1_scaffold_1399_26
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(21813..22679)
DNA (867bp) protein (289aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hemK; protein methyltransferase HemK (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MP78_9FIRM
L1_008_000M1_scaffold_1399_27
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(22673..23629)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LZN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87611.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_1399_28
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(23639..23824)
DNA (186bp) protein (62aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
putative two-component histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IHF6_9FIRM
Displaying 28 items

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