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L1_008_000M1_scaffold_1402

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1402_1
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(3..173)
DNA (171bp) protein (57aa)
RNA polymerase sigma-70 factor sigma-B/F/G subfamily n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAQ9_9FIRM
RNA polymerase sigma-70 factor sigma-B/F/G subfamily {ECO:0000313|EMBL:CDB30646.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
putative RNA polymerase sigma factor
L1_008_000M1_scaffold_1402_2
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(173..613)
DNA (441bp) protein (147aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LQZ6_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:CDB88345.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_1402_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(603..932)
DNA (330bp) protein (110aa)
Anti-sigma factor antagonist n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IL71_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
anti-sigma F factor antagonist
L1_008_000M1_scaffold_1402_4
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(1033..3681)
DNA (2649bp) protein (883aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1E9_9FIRM
L1_008_000M1_scaffold_1402_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3708..4232)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47708.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L1_008_000M1_scaffold_1402_6
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(4546..5043)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LY29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87016.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_1402_7
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(5045..5542)
DNA (498bp) protein (166aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IFL2_9FIRM
L1_008_000M1_scaffold_1402_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(5539..6096)
DNA (558bp) protein (186aa)
RsmD family RNA methyltransferase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LHV7_9FIRM
RsmD family RNA methyltransferase {ECO:0000313|EMBL:CDB87018.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_1402_9
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(6093..7925)
DNA (1833bp) protein (611aa)
UvrABC system protein C n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ECN2_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
uvrC; UvrABC system protein C
L1_008_000M1_scaffold_1402_10
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(7981..8241)
DNA (261bp) protein (87aa)
HPr family phosphocarrier n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LY33_9FIRM
HPr family phosphocarrier {ECO:0000313|EMBL:CDB87021.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
crh; HPr-like protein Crh
L1_008_000M1_scaffold_1402_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(8356..10731)
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Endonuclease MutS2 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IFK2_9FIRM
mutS2; MutS2 protein
L1_008_000M1_scaffold_1402_12
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(10748..11515)
DNA (768bp) protein (256aa)
DNA repair protein RecO n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LHW1_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
recO; DNA repair protein RecO
L1_008_000M1_scaffold_1402_13
unknown

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comp(11506..11631)
DNA (126bp) protein (42aa)

This feature has no annotations

L1_008_000M1_scaffold_1402_14
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11772..12629)
DNA (858bp) protein (286aa)
EDD domain protein, DegV family n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWB5_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EEG93094.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
EDD domain protein, DegV family
L1_008_000M1_scaffold_1402_15
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(12604..13083)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EJM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97519.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
L1_008_000M1_scaffold_1402_16
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(13210..14103)
DNA (894bp) protein (298aa)
GTPase Era n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LMJ6_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
era; GTP-binding protein Era
L1_008_000M1_scaffold_1402_17
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(14117..14614)
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Endoribonuclease YbeY n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IMY6_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1402_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(14611..15633)
DNA (1023bp) protein (341aa)
PhoH family protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IY53_9FIRM
PhoH family protein {ECO:0000313|EMBL:CCY41667.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
PhoH-like protein
L1_008_000M1_scaffold_1402_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(15630..16826)
DNA (1197bp) protein (399aa)
Putative sporulation protein YqfD n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IHX3_9FIRM
Putative sporulation protein YqfD {ECO:0000313|EMBL:CCY41665.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
yqfD; putative stage IV sporulation protein
L1_008_000M1_scaffold_1402_20
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(16814..17113)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LTU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87069.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
sporulation protein YqfC
L1_008_000M1_scaffold_1402_21
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

17191..18285
DNA (1095bp) protein (365aa)
Sporulation integral membrane protein YlbJ n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LMK1_9FIRM
Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:CDB87070.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_1402_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

18319..18534
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LY76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87071.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_1402_23
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18619..19482)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VVH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ36276.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
Galactose mutarotase and related enzymes
L1_008_000M1_scaffold_1402_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19720..21300
DNA (1581bp) protein (527aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
Ribose transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDJ0_9FIRM
L1_008_000M1_scaffold_1402_25
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21300..22304
DNA (1005bp) protein (335aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LL31_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EET58650.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L1_008_000M1_scaffold_1402_26
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22376..23770
DNA (1395bp) protein (465aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FJQ8_9CLOT
ABC-type sugar transport system {ECO:0000313|EMBL:EGA91835.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
ABC-type sugar transport system, periplasmic component
Displaying 26 items

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