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L1_008_000M1_scaffold_1837

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1837_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(1..576)
DNA (576bp) protein (192aa)
Malic enzyme (EC:1.1.1.38)
Malic enzyme n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MPS1_9FIRM
Malic enzyme {ECO:0000313|EMBL:CDB87807.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_1837_2
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(588..1715)
DNA (1128bp) protein (376aa)
malate dehydrogenase (NAD) (EC:1.1.1.37)
Malate dehydrogenase (NAD) n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ELM2_9FIRM
Malate dehydrogenase (NAD) {ECO:0000313|EMBL:CCX93550.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
L1_008_000M1_scaffold_1837_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(1852..2877)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IS58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY39692.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ribokinase-like domain-containing protein
L1_008_000M1_scaffold_1837_4
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(2874..3509)
DNA (636bp) protein (212aa)
khg/kdpg aldolase (EC:4.1.3.16 4.1.2.14)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IC72_9FIRM
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:CCY39693.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1837_5
Lactobacillus reuteri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(3522..3893)
DNA (372bp) protein (124aa)
6-phosphogluconolactonase n=4 Tax=Lactobacillus reuteri RepID=A5VJ21_LACRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGR64009.1}; TaxID=1358027 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus reuteri TD1.;"
L1_008_000M1_scaffold_1837_6
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(4720..5259)
DNA (540bp) protein (180aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IER0_9FIRM
L1_008_000M1_scaffold_1837_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(5262..5738)
DNA (477bp) protein (159aa)
SsrA-binding protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LU52_9FIRM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
SsrA-binding protein
L1_008_000M1_scaffold_1837_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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5881..6150
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M051_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87801.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_1837_9
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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6150..7460
DNA (1311bp) protein (437aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HBX7_9FIRM
L1_008_000M1_scaffold_1837_10
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(7493..8710)
DNA (1218bp) protein (406aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IIQ5_9FIRM
L1_008_000M1_scaffold_1837_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8815..9552)
DNA (738bp) protein (246aa)
4Fe-4S binding domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5E5_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEU96833.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
aldo/keto reductase
L1_008_000M1_scaffold_1837_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9619..9783)
DNA (165bp) protein (55aa)
4Fe-4S binding domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5E5_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEU96833.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
aldo/keto reductase
L1_008_000M1_scaffold_1837_13
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(9902..11257)
DNA (1356bp) protein (452aa)
Amidohydrolase family protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LMH3_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:CDB87030.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
putative hydrolase
L1_008_000M1_scaffold_1837_14
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11469..12401)
DNA (933bp) protein (311aa)
MATE efflux family protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YNP1_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDA24786.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_000M1_scaffold_1837_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12541..13368
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42585.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L1_008_000M1_scaffold_1837_16
unknown

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13584..15215
DNA (1632bp) protein (544aa)

This feature has no annotations

L1_008_000M1_scaffold_1837_17
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(15258..15932)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IRE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42844.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1837_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(15929..17902)
DNA (1974bp) protein (658aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1D9_9FIRM
L1_008_000M1_scaffold_1837_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(17934..18794)
DNA (861bp) protein (287aa)
Sporulation protein YunB n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IRE8_9FIRM
Sporulation protein YunB {ECO:0000313|EMBL:CCY42849.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
transcriptional regulator
Displaying 19 items

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