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L1_008_000M1_scaffold_1841

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1841_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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1..225
DNA (225bp) protein (75aa)
30S ribosomal protein S18 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJQ8_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
SSU ribosomal protein S18P
L1_008_000M1_scaffold_1841_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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489..971
DNA (483bp) protein (161aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ISY5_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1841_3
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1137..2420
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09098.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L1_008_000M1_scaffold_1841_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2417..2779
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09097.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L1_008_000M1_scaffold_1841_5
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(2714..3640)
DNA (927bp) protein (309aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Pseudouridine synthase RluA family n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IV90_9FIRM
RluA family pseudouridine synthase
L1_008_000M1_scaffold_1841_6
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(3730..4809)
DNA (1080bp) protein (360aa)
Sporulation integral membrane protein YtvI n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJU4_9FIRM
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:CDB87733.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
sporulation integral membrane protein YtvI
L1_008_000M1_scaffold_1841_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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4891..5397
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LVN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87734.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_1841_8
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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5417..6607
DNA (1191bp) protein (397aa)
alcohol dehydrogenase (NADP(+)) (EC:1.1.1.2)
Iron-containing alcohol dehydrogenase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IP78_9FIRM
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:CCY42089.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1841_9
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

6620..7813
DNA (1194bp) protein (398aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hom; homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LZY9_9FIRM
L1_008_000M1_scaffold_1841_10
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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7831..9039
DNA (1209bp) protein (403aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
lysC; Aspartokinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MPJ9_9FIRM
L1_008_000M1_scaffold_1841_11
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

9152..9634
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87738.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_1841_12
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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9897..10361
DNA (465bp) protein (155aa)
Translation initiation factor IF-3 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IZC9_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
infC; translation initiation factor IF-3
L1_008_000M1_scaffold_1841_13
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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10398..10595
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=environmental samples RepID=R5IIX8_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
rpmI; 50S ribosomal protein L35
L1_008_000M1_scaffold_1841_14
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists


10632..10985
DNA (354bp) protein (118aa)
50S ribosomal protein L20 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJ65_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
LSU ribosomal protein L20P
L1_008_000M1_scaffold_1841_15
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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comp(11087..12022)
DNA (936bp) protein (312aa)
Putative transketolase C-terminal subunit n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D738_9FIRM
Putative transketolase C-terminal subunit {ECO:0000313|EMBL:CCX71706.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
transketolase, C-terminal subunit
L1_008_000M1_scaffold_1841_16
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(12022..12855)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AUP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45689.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
transketolase
L1_008_000M1_scaffold_1841_17
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(12870..13835)
DNA (966bp) protein (322aa)
Lactate dehydrogenase and related dehydrogenases (EC:1.1.1.29)
Lactate dehydrogenase and related dehydrogenases n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1H6_9FIRM
Lactate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CCY42787.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1841_18
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13879..14769)
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HNR1_9CLOT
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:KJJ68366.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
xylose isomerase
L1_008_000M1_scaffold_1841_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(14919..15905)
DNA (987bp) protein (329aa)
Penicillin V acylase and related amidases (EC:3.5.1.24)
Penicillin V acylase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJX2_9FIRM
Penicillin V acylase {ECO:0000313|EMBL:CCY40599.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_1841_20
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(16480..17238)
DNA (759bp) protein (253aa)
NtrC2 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D3C3_9FIRM
NtrC2 {ECO:0000313|EMBL:CDA82280.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
sulfate ester ABC transporter ATP-binding protein
L1_008_000M1_scaffold_1841_21
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(17425..18465)
DNA (1041bp) protein (347aa)
Site-specific recombinase, phage integrase family n=1 Tax=Clostridium leptum DSM 753 RepID=A7VS08_9CLOT
Site-specific recombinase XerD {ECO:0000313|EMBL:CRH74666.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Phage integrase family.
Displaying 21 items

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