ggKbase home page

L1_008_000M1_scaffold_2053

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2053_1
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

526..777
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IN57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY43578.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L1_008_000M1_scaffold_2053_2
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

791..1126
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZQB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA41748.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
hypothetical protein
L1_008_000M1_scaffold_2053_3
Sphaerochaeta globosa, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(1182..2036)
DNA (855bp) protein (285aa)
Transcriptional regulator, LysR family n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RVC1_SPHGB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADY12913.1}; TaxID=158189 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy); (Spirochaeta sp. (strain Buddy)).;"
L1_008_000M1_scaffold_2053_4
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

Not on your lists

2160..3203
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CKQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX67049.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
conserved membrane protein of unknown function
L1_008_000M1_scaffold_2053_5
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(3475..4641)
DNA (1167bp) protein (389aa)
Cell wall/surface repeat protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LNX8_9FIRM
Cell wall/surface repeat protein {ECO:0000313|EMBL:CDB87540.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_2053_6
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

4811..5224
DNA (414bp) protein (138aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Mini-ribonuclease 3 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LZI9_9FIRM
hypothetical protein
L1_008_000M1_scaffold_2053_7
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

5214..6974
DNA (1761bp) protein (587aa)
Fibronectin-binding protein A domain protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ILY6_9FIRM
Fibronectin-binding protein A domain protein {ECO:0000313|EMBL:CCY43095.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
fibronectin-binding protein
L1_008_000M1_scaffold_2053_8
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

6977..7264
DNA (288bp) protein (96aa)
Cysteine-rich small domain protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IS32_9FIRM
Cysteine-rich small domain protein {ECO:0000313|EMBL:CCY43094.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Uncharacterized protein containing a Zn-finger-like domain
L1_008_000M1_scaffold_2053_9
unknown

Not on your lists

7304..7438
DNA (135bp) protein (45aa)

This feature has no annotations

L1_008_000M1_scaffold_2053_10
unknown

Not on your lists

comp(7530..7799)
DNA (270bp) protein (90aa)

This feature has no annotations

L1_008_000M1_scaffold_2053_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

8012..8299
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ITD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY43594.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_2053_12
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(8336..9229)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJ66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40364.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L1_008_000M1_scaffold_2053_13
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(9226..10419)
DNA (1194bp) protein (398aa)
putative RNA helicase (EC:3.6.1.-)
DEAD/DEAH box helicase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE60_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:CCY40365.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_2053_14
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

10654..11232
DNA (579bp) protein (193aa)
Putative L-ribulose-5-phosphate 4-epimerase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ISS2_9FIRM
Putative L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:CCY39776.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
class II aldolase/adducin-like protein
L1_008_000M1_scaffold_2053_15
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11249..11662
DNA (414bp) protein (138aa)
Acetyltransferase GNAT family n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EKX3_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDE02943.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
GNAT family acetyltransferase
L1_008_000M1_scaffold_2053_16
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(11715..12428)
DNA (714bp) protein (238aa)
Branched-chain amino acid ABC transport ATP-binding protein LivF2 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ISJ5_9FIRM
Branched-chain amino acid ABC transport ATP-binding protein LivF2 {ECO:0000313|EMBL:CCY39817.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
branched-chain amino acid ABC transporter ATP-binding protein
L1_008_000M1_scaffold_2053_17
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(12421..13263)
DNA (843bp) protein (281aa)
Branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ICI7_9FIRM
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY39818.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ABC transporter
L1_008_000M1_scaffold_2053_18
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(13256..14371)
DNA (1116bp) protein (372aa)
ABC-type branched-chain amino acid transport system permease component n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RXL7_9FIRM
ABC-type branched-chain amino acid transport system permease component {ECO:0000313|EMBL:CCZ45533.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
branched-chain amino acid ABC transporter permease protein
L1_008_000M1_scaffold_2053_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(14385..15263)
DNA (879bp) protein (293aa)
ABC transporter permease n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031A9E31
Putative high-affinity branched-chain amino acid ABC transporter permease protein LivH {ECO:0000313|EMBL:CCY39820.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
branched-chain amino acid ABC transporter permease protein
L1_008_000M1_scaffold_2053_20
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(15753..16871)
DNA (1119bp) protein (373aa)
Extracellular ligand-binding receptor n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SEZ1_9FIRM
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CCZ45356.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
branched-chain amino acid ABC transporter branched-chain amino acid-binding protein
Displaying 20 items

View Taxonomy