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L1_008_000M1_scaffold_622

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_622_1
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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2..493
DNA (492bp) protein (164aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IV33_9FIRM
L1_008_000M1_scaffold_622_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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548..1156
DNA (609bp) protein (203aa)
Putative stage II sporulation protein R n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJU2_9FIRM
Putative stage II sporulation protein R {ECO:0000313|EMBL:CCY40559.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
putative stage II sporulation protein R
L1_008_000M1_scaffold_622_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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1232..4489
DNA (3258bp) protein (1086aa)
ATP-dependent nuclease subunit B (EC:3.6.1.-)
Putative ATP-dependent nuclease subunit B n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5INL6_9FIRM
Putative ATP-dependent nuclease subunit B {ECO:0000313|EMBL:CCY43680.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_622_4
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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4482..8024
DNA (3543bp) protein (1181aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
addA; ATP-dependent nuclease subunit A (EC:3.6.1.-)
ATP-dependent helicase/nuclease subunit A n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYI3_9FIRM
L1_008_000M1_scaffold_622_5
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(8102..8458)
DNA (357bp) protein (119aa)
Stage V sporulation protein AE n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IEG3_9FIRM
Stage V sporulation protein AE {ECO:0000313|EMBL:CCY40478.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
sporulation stage V protein AE
L1_008_000M1_scaffold_622_6
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(8463..9482)
DNA (1020bp) protein (340aa)
Stage V sporulation protein AD n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H8F1_9FIRM
Stage V sporulation protein AD {ECO:0000313|EMBL:CDB29836.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
stage V sporulation protein AD
L1_008_000M1_scaffold_622_7
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(9651..9944)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IEF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40473.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L1_008_000M1_scaffold_622_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(10121..10366)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LMX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87225.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_622_9
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists


comp(10543..12927)
DNA (2385bp) protein (795aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
pheT; Phenylalanine-tRNA ligase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IKR8_9FIRM
L1_008_000M1_scaffold_622_10
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(12944..13972)
DNA (1029bp) protein (343aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
pheS; phenylalanyl-tRNA synthetase alpha chain (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MN70_9FIRM
L1_008_000M1_scaffold_622_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

14360..15229
DNA (870bp) protein (290aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ADP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE03_9FIRM
carbohydrate kinase
L1_008_000M1_scaffold_622_12
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

15234..15854
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJ46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40344.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_622_13
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

15826..17004
DNA (1179bp) protein (393aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE36_9FIRM
L1_008_000M1_scaffold_622_14
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

17133..17495
DNA (363bp) protein (121aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
mRNA interferase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MLG4_9FIRM
endoribonuclease
L1_008_000M1_scaffold_622_15
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(17549..19039)
DNA (1491bp) protein (497aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IUH4_9FIRM
L1_008_000M1_scaffold_622_16
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

19151..20173
DNA (1023bp) protein (341aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M1G0_9FIRM
L1_008_000M1_scaffold_622_17
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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20188..21309
DNA (1122bp) protein (374aa)
UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IQB2_9FIRM
UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase {ECO:0000313|EMBL:CCY42444.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase
L1_008_000M1_scaffold_622_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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21302..22453
DNA (1152bp) protein (384aa)
mnaA; UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J0B2_9FIRM
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CCY42446.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_622_19
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

22489..23265
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LN22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87275.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_622_20
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(23252..23590)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87276.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L1_008_000M1_scaffold_622_21
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(23605..23991)
DNA (387bp) protein (129aa)
Collagen alpha-1(I) chain (Alpha-1 type I collagen) n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MNC3_9FIRM
Collagen alpha-1(I) chain (Alpha-1 type I collagen) {ECO:0000313|EMBL:CDB87277.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_622_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(23988..24233)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LIG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87278.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_622_23
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

24268..24765
DNA (498bp) protein (166aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Phosphoesterase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5INH3_9FIRM
MJ0936 family phosphodiesterase
L1_008_000M1_scaffold_622_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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24795..25562
DNA (768bp) protein (256aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDB1_9FIRM
L1_008_000M1_scaffold_622_25
bacterium UASB14, Bacteria

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25559..26803
DNA (1245bp) protein (415aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=5 Tax=Clostridium RepID=N9Z8C0_9CLOT
L1_008_000M1_scaffold_622_26
unknown

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comp(26808..26993)
DNA (186bp) protein (62aa)

This feature has no annotations

L1_008_000M1_scaffold_622_27
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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27076..27987
DNA (912bp) protein (304aa)
Hydrolase alpha/beta domain protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LIH2_9FIRM
Hydrolase alpha/beta domain protein {ECO:0000313|EMBL:CDB87283.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
putative hydrolase
L1_008_000M1_scaffold_622_28
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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28120..29526
DNA (1407bp) protein (469aa)
Putative surface layer protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LUG6_9FIRM
Putative surface layer protein {ECO:0000313|EMBL:CDB87284.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
putative surface layer protein
L1_008_000M1_scaffold_622_29
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

29615..29728
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40499.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L1_008_000M1_scaffold_622_30
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

29730..30071
DNA (342bp) protein (114aa)
Arsenate reductase and related proteins glutaredoxin family n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IEM6_9FIRM
Arsenate reductase and related proteins glutaredoxin family {ECO:0000313|EMBL:CCY40500.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Arsenate reductase and related proteins, glutaredoxin family
Displaying items 1-30 of 62 in total

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