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L1_008_000M1_scaffold_86

Search features with annotation key words

Displaying items 1-30 of 217 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_86_1
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2..10444)
DNA (10443bp) protein (3481aa)
adhesin n=3 Tax=Methanobrevibacter smithii RepID=UPI00036AA589
Uncharacterized protein {ECO:0000313|EMBL:CDF28473.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
adhesin-like protein
L1_008_000M1_scaffold_86_2
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10724..11869)
DNA (1146bp) protein (382aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
tRNA sulfurtransferase n=1 Tax=Methanobrevibacter smithii RepID=UPI00036A2F17
thiamine biosynthesis ATP pyrophosphatase, ThiI
L1_008_000M1_scaffold_86_3
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11871..13058)
DNA (1188bp) protein (396aa)
pH regulator (Monovalent cation:H+ antiporter) n=4 Tax=Methanobrevibacter RepID=A5UKU5_METS3
pH regulator (monovalent cation:H+ antiporter)
pH regulator (Monovalent cation:H+ antiporter) {ECO:0000313|EMBL:CDF28475.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_86_4
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(13177..15870)
DNA (2694bp) protein (898aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
alanyl-tRNA synthetase n=1 Tax=Methanobrevibacter smithii RepID=UPI000368F7A8
L1_008_000M1_scaffold_86_5
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16048..16353)
DNA (306bp) protein (102aa)
50S ribosomal protein L12 n=4 Tax=Methanobrevibacter RepID=A5UKU7_METS3
rpl12p; 50S ribosomal protein L12P
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L1_008_000M1_scaffold_86_6
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(16422..17429)
DNA (1008bp) protein (336aa)
50S ribosomal protein L10 n=2 Tax=Methanobrevibacter smithii RepID=RL10_METS3
rplP0; acidic ribosomal protein P0
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
L1_008_000M1_scaffold_86_7
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(17429..18079)
DNA (651bp) protein (217aa)
50S ribosomal protein L1 n=1 Tax=Methanobrevibacter smithii RepID=UPI0003822701
rpl1P; 50S ribosomal protein L1P
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318, ECO:0000256|SAAS:SAAS00010815}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
L1_008_000M1_scaffold_86_8
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(18254..18736)
DNA (483bp) protein (161aa)
50S ribosomal protein L11 n=4 Tax=Methanobrevibacter RepID=RL11_METS3
rpl11p; 50S ribosomal protein L11P
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L1_008_000M1_scaffold_86_9
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(18736..19206)
DNA (471bp) protein (157aa)
Transcription elongation factor Spt5 n=4 Tax=Methanobrevibacter RepID=A5UKV1_METS3
nusG; transcription antitermination protein NusG
Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_86_10
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19440..19619)
DNA (180bp) protein (60aa)
Protein translocase subunit SecE n=4 Tax=Methanobrevibacter RepID=SECE_METS3
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; Protein transport protein Sec61 gamma subunit homolog {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L1_008_000M1_scaffold_86_11
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20089..20685)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Methanobrevibacter smithii RepID=UPI00037D9AD1
Uncharacterized protein {ECO:0000313|EMBL:CDF28483.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_86_12
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20737..22998)
DNA (2262bp) protein (754aa)
Putative adhesin-like protein n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PTM5_9EURY
Putative adhesin-like protein {ECO:0000313|EMBL:CDF28484.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
putative adhesin-like protein
L1_008_000M1_scaffold_86_13
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24176..25309)
DNA (1134bp) protein (378aa)
Cell division protein FtsZ n=3 Tax=Methanobrevibacter RepID=A5UKV3_METS3
cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L1_008_000M1_scaffold_86_14
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

26131..27072
DNA (942bp) protein (314aa)
tetrahydromethanopterin S-methyltransferase subunit H (EC:2.1.1.86)
Tetrahydromethanopterin S-methyltransferase, subunit H, MtrH n=4 Tax=Methanobrevibacter RepID=A5UKV4_METS3
Tetrahydromethanopterin S-methyltransferase subunit H MtrH {ECO:0000313|EMBL:CDF28487.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_86_15
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27145..27714)
DNA (570bp) protein (190aa)
Uncharacterized protein n=2 Tax=Methanobrevibacter smithii RepID=B9AGF5_METSM
Uncharacterized protein {ECO:0000313|EMBL:EFC93896.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
hypothetical protein
L1_008_000M1_scaffold_86_16
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

27779..28636
DNA (858bp) protein (286aa)
F420-0:Gamma-glutamyl ligase n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9AGF4_METSM
F420-0:Gamma-glutamyl ligase {ECO:0000313|EMBL:EEE42544.1}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
hypothetical protein
L1_008_000M1_scaffold_86_17
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

28722..29243
DNA (522bp) protein (174aa)
Transcription factor E n=4 Tax=Methanobrevibacter RepID=TFE_METS3
transcription initiation factor E subunit alpha
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Transcription initiation factor TFIIE {ECO:0000256|HAMAP-Rule:MF_01909}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L1_008_000M1_scaffold_86_18
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

29250..29744
DNA (495bp) protein (165aa)
TIGR00295 family protein n=3 Tax=Methanobrevibacter RepID=B9AGF2_METSM
TIGR00295 family protein {ECO:0000313|EMBL:EFC93899.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
HD superfamily hydrolase
L1_008_000M1_scaffold_86_19
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

29747..30661
DNA (915bp) protein (305aa)
archaeosine tRNA-ribosyltransferase (EC:2.4.2.-)
Putative domain 2 n=1 Tax=Methanobrevibacter smithii DSM 2374 RepID=D2ZN82_METSM
Putative domain 2 {ECO:0000313|EMBL:EFC93900.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L1_008_000M1_scaffold_86_20
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

30865..31149
DNA (285bp) protein (95aa)
Predicted metal-sulfur cluster biosynthetic enzyme n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PRD8_9EURY
Predicted metal-sulfur cluster biosynthetic enzyme {ECO:0000313|EMBL:CDF28493.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
metal-sulfur cluster biosynthetic protein
L1_008_000M1_scaffold_86_21
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

31430..31933
DNA (504bp) protein (168aa)
Predicted regulator of amino acid metabolism n=4 Tax=Methanobrevibacter RepID=A5UKW2_METS3
regulator of amino acid metabolism
Predicted regulator of amino acid metabolism {ECO:0000313|EMBL:ABQ86840.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L1_008_000M1_scaffold_86_22
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(31927..32202)
DNA (276bp) protein (92aa)
Hydrogenase expression/formation protein, HypC n=4 Tax=Methanobrevibacter RepID=A5UKW3_METS3
hydrogenase expression/formation protein, HypC
Hydrogenase expression/formation protein HypC {ECO:0000313|EMBL:CDF28495.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_86_23
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

32296..33597
DNA (1302bp) protein (434aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PUV1_9EURY
Dihydrolipoyl dehydrogenase {ECO:0000313|EMBL:CDF28496.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_86_24
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(33600..34646)
DNA (1047bp) protein (349aa)
UDP-glucuronosyltransferase n=1 Tax=Methanobrevibacter smithii RepID=UPI00036383DF
Uncharacterized protein {ECO:0000313|EMBL:CDF28497.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
UDP-glycosyltransferase
L1_008_000M1_scaffold_86_25
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(34653..35615)
DNA (963bp) protein (321aa)
Uncharacterized protein n=3 Tax=Methanobrevibacter smithii RepID=B9AGE5_METSM
putative cell wall biosynthesis protein
Putative cell wall biosynthesis protein {ECO:0000313|EMBL:ABQ86844.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L1_008_000M1_scaffold_86_26
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(35720..36781)
DNA (1062bp) protein (354aa)
Protein pelota homolog {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00004956}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00011872};; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
Protein pelota homolog n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PTP4_9EURY
cell division protein (RNA-binding), PelA
L1_008_000M1_scaffold_86_27
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

36828..38138
DNA (1311bp) protein (437aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:EFC93908.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EFC93908.1};; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=2 Tax=Methanobrevibacter RepID=D2ZN90_METSM
L1_008_000M1_scaffold_86_28
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

38520..40712
DNA (2193bp) protein (731aa)
AAA family ATPase, CDC48 subfamily n=1 Tax=Methanobrevibacter smithii DSM 2374 RepID=D2ZN91_METSM
AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:EFC93909.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
cell division protein CDC48
L1_008_000M1_scaffold_86_29
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(40791..41216)
DNA (426bp) protein (142aa)
phage antirepressor n=1 Tax=Methanobrevibacter smithii RepID=UPI0003716745
Prophage antirepressor {ECO:0000313|EMBL:CDF28502.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
hypothetical protein
L1_008_000M1_scaffold_86_30
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(41337..41669)
DNA (333bp) protein (111aa)
Uncharacterized protein n=3 Tax=Methanobrevibacter RepID=D2ZN92_METSM
Prophage antirepressor {ECO:0000313|EMBL:CDF28502.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
hypothetical protein
Displaying items 1-30 of 217 in total

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