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L1_008_000M1_scaffold_142

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_142_1
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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2..1447
DNA (1446bp) protein (482aa)
DNA polymerase II small subunit (EC:2.7.7.7)
DNA polymerase II small subunit {ECO:0000256|HAMAP-Rule:MF_00325}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00325};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00325};; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
DNA polymerase II, small subunit n=2 Tax=Methanobrevibacter smithii RepID=A5UMP8_METS3
L1_008_000M1_scaffold_142_2
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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1500..2087
DNA (588bp) protein (196aa)
fuculose-1-phosphate aldolase (EC:4.1.2.17)
Fuculose-1-phosphate aldolase n=2 Tax=Methanobrevibacter RepID=R7PUV2_9EURY
Fuculose-1-phosphate aldolase {ECO:0000313|EMBL:CDF29688.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_142_3
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(2079..2270)
DNA (192bp) protein (64aa)
Uncharacterized protein n=3 Tax=Methanobrevibacter smithii RepID=D2ZNW2_METSM
putative Met repressor-like protein
Putative Met repressor-like protein {ECO:0000313|EMBL:ABQ87474.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L1_008_000M1_scaffold_142_4
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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2389..2637
DNA (249bp) protein (83aa)
UPF0147 protein Msm_1268 n=4 Tax=Methanobrevibacter RepID=A5UMP5_METS3
hypothetical protein
UPF0147 protein Msm_1268 {ECO:0000256|HAMAP-Rule:MF_00342}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L1_008_000M1_scaffold_142_5
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(2644..3663)
DNA (1020bp) protein (340aa)
CbiG protein n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PWE8_9EURY
CbiG protein {ECO:0000313|EMBL:CDF29685.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
cobalamin biosynthesis protein G, CbiG
L1_008_000M1_scaffold_142_6
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(3660..4703)
DNA (1044bp) protein (348aa)
cobD; cobalamin biosynthesis protein (EC:6.3.1.10)
Probable cobalamin biosynthesis protein CobD n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PX37_9EURY
Probable cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_142_7
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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4766..5251
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PUU7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:CDF29683.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
hypothetical protein
L1_008_000M1_scaffold_142_8
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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6190..7341
DNA (1152bp) protein (384aa)
ORC1-type DNA replication protein n=4 Tax=Methanobrevibacter RepID=A5UMP1_METS3
cell division control protein 6, Cdc6
ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
L1_008_000M1_scaffold_142_9
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(7329..8279)
DNA (951bp) protein (317aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase n=2 Tax=Methanobrevibacter RepID=D2ZNW8_METSM
L1_008_000M1_scaffold_142_10
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(8286..8777)
DNA (492bp) protein (164aa)
Uncharacterized protein n=2 Tax=Methanobrevibacter RepID=D2ZNW9_METSM
Uncharacterized protein {ECO:0000313|EMBL:CDF29680.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
flavodoxin (protoporphyrinogen oxidase)
L1_008_000M1_scaffold_142_11
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(8774..9634)
DNA (861bp) protein (287aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079};; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase n=3 Tax=Methanobrevibacter RepID=B9AFQ2_METSM
L1_008_000M1_scaffold_142_12
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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9851..10060
DNA (210bp) protein (70aa)
Histone n=4 Tax=Methanobrevibacter RepID=A5UMN7_METS3
histone
Histone {ECO:0000313|EMBL:CDF29678.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_142_13
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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10101..11408
DNA (1308bp) protein (436aa)
5'-deoxyadenosine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=5'-dA deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.41 {ECO:0000256|HAMAP-Rule:MF_01281};; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=3 Tax=Methanobrevibacter RepID=MTAD_METS3
metal-dependent hydrolase
L1_008_000M1_scaffold_142_14
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(11411..13060)
DNA (1650bp) protein (550aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1)
Fumarate reductase/succinate dehydrogenase flavoprotein, TfrA {ECO:0000313|EMBL:ABQ87463.1}; EC=1.3.99.1 {ECO:0000313|EMBL:ABQ87463.1};; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
Fumarate reductase/succinate dehydrogenase flavoprotein, TfrA n=1 Tax=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) RepID=A5UMN5_METS3
L1_008_000M1_scaffold_142_15
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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13299..13673
DNA (375bp) protein (125aa)
Riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; Short=RFK {ECO:0000256|HAMAP-Rule:MF_01285};; EC=2.7.1.161 {ECO:0000256|HAMAP-Rule:MF_01285};; CTP-dependent riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; CTP:riboflavin 5'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01285}; Flavokinase {ECO:0000256|HAMAP-Rule:MF_01285}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
Riboflavin kinase n=3 Tax=Methanobrevibacter RepID=RIFK_METS3
riboflavin kinase
L1_008_000M1_scaffold_142_16
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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13909..14589
DNA (681bp) protein (227aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|RuleBase:RU003843}; Short=DHBP synthase {ECO:0000256|RuleBase:RU003843};; EC=4.1.99.12 {ECO:0000256|RuleBase:RU003843};; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=3 Tax=Methanobrevibacter smithii RepID=A5UMN3_METS3
3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB
L1_008_000M1_scaffold_142_17
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(14590..15015)
DNA (426bp) protein (142aa)
Uncharacterized protein n=3 Tax=Methanobrevibacter RepID=B9AFP1_METSM
Uncharacterized protein {ECO:0000313|EMBL:CDF29673.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
hypothetical protein
L1_008_000M1_scaffold_142_18
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(15016..16536)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PYN9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:CDF29672.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
cobyrinic acid a,c-diamide synthase
L1_008_000M1_scaffold_142_19
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(16959..18329)
DNA (1371bp) protein (457aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000255|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000255|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000255|HAMAP-Rule:MF_00120};; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) RepID=GATA_METS3
L1_008_000M1_scaffold_142_20
unknown

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comp(18510..18647)
DNA (138bp) protein (46aa)

This feature has no annotations

L1_008_000M1_scaffold_142_21
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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18761..19555
DNA (795bp) protein (265aa)
cation transporter HAD ATPase (EC:3.6.3.4)
Haloacid dehalogenase-like hydrolase n=2 Tax=Methanobrevibacter RepID=B9AFN8_METSM
Uncharacterized protein {ECO:0000313|EMBL:CDF29670.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_142_22
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(19536..20255)
DNA (720bp) protein (240aa)
AP endonuclease, family 2 n=1 Tax=Methanobrevibacter smithii DSM 2374 RepID=D2ZNY0_METSM
AP endonuclease, family 2 {ECO:0000313|EMBL:EFC92977.1}; TaxID=521002 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2374.;"
sugar phosphate isomerase/epimerase
L1_008_000M1_scaffold_142_23
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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20366..20794
DNA (429bp) protein (143aa)
Predicted transcriptional regulator, PadR-like family n=2 Tax=Methanobrevibacter RepID=A5UMM7_METS3
PadR-like family transcriptional regulator
Predicted transcriptional regulator PadR-like family {ECO:0000313|EMBL:CDF29668.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_142_24
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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20778..21836
DNA (1059bp) protein (353aa)
Daunorubicin resistance ABC transporter, ATP-binding protein n=3 Tax=Methanobrevibacter RepID=B9AFN4_METSM
ABC transporter {ECO:0000313|EMBL:CDF29667.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
multidrug ABC transporter, ATPase component
L1_008_000M1_scaffold_142_25
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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21823..23040
DNA (1218bp) protein (406aa)
ABC-2 type transporter n=2 Tax=Methanobrevibacter RepID=B9AFN3_METSM
Uncharacterized protein {ECO:0000313|EMBL:CDF29666.1}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
multidrug ABC transporter, permease component
L1_008_000M1_scaffold_142_26
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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23053..24288
DNA (1236bp) protein (412aa)
PQQ enzyme repeat protein n=2 Tax=root RepID=B9AFN2_METSM
PQQ enzyme repeat protein {ECO:0000313|EMBL:EEE42272.1}; TaxID=483214 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii DSM 2375.;"
serine/threonine protein kinase related protein (PQQ-binding)
L1_008_000M1_scaffold_142_27
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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24346..25881
DNA (1536bp) protein (512aa)
2-isopropylmalate synthase (EC:2.3.3.13)
Isopropylmalate synthase, LeuA {ECO:0000313|EMBL:ABQ87451.1}; EC=2.3.3.13 {ECO:0000313|EMBL:ABQ87451.1};; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
Isopropylmalate synthase, LeuA n=2 Tax=Methanobrevibacter smithii RepID=A5UMM3_METS3
L1_008_000M1_scaffold_142_28
Methanobrevibacter smithii CAG:186, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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25954..26232
DNA (279bp) protein (93aa)
DNA/RNA-binding protein Alba n=4 Tax=Methanobrevibacter RepID=A5UMM2_METS3
DNA-binding protein, AlbA
DNA/RNA-binding protein Alba {ECO:0000256|HAMAP-Rule:MF_01122}; TaxID=1263088 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; environmental samples.;" source="Methanobrevibacter smithii CAG:186.;"
L1_008_000M1_scaffold_142_29
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(26255..26914)
DNA (660bp) protein (220aa)
Predicted metal-dependent phosphoesterase, PHP family n=1 Tax=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) RepID=A5UMM1_METS3
metal-dependent phosphoesterase
Predicted metal-dependent phosphoesterase, PHP family {ECO:0000313|EMBL:ABQ87449.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
L1_008_000M1_scaffold_142_30
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(26916..27950)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Methanobrevibacter smithii RepID=UPI00037E5E5B
putative actin-like ATPase
Putative actin-like ATPase {ECO:0000313|EMBL:ABQ87448.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
Displaying items 1-30 of 93 in total

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