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L1_008_000M1_scaffold_3368

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3368_1
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19..261)
DNA (243bp) protein (81aa)
RNA-binding protein Hfq n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GMG2_9FIRM
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hfq; Hfq protein
L1_008_000M1_scaffold_3368_2
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(308..1252)
DNA (945bp) protein (315aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.8)
tRNA dimethylallyltransferase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GV78_9FIRM
L1_008_000M1_scaffold_3368_3
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1273..3168)
DNA (1896bp) protein (632aa)
DNA mismatch repair protein MutL n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GJG4_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
mutL; DNA mismatch repair protein MutL
L1_008_000M1_scaffold_3368_4
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3186..5768)
DNA (2583bp) protein (861aa)
DNA mismatch repair protein MutS n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HHZ4_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00039014}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
mutS; DNA mismatch repair protein MutS
L1_008_000M1_scaffold_3368_5
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5884..7260)
DNA (1377bp) protein (459aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GWF1_9FIRM
miaB; isopentenyl-adenosine A37 tRNA methylthiolase
L1_008_000M1_scaffold_3368_6
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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7495..8271
DNA (777bp) protein (259aa)
rRNA methyltransferase (EC:2.1.1.-)
rRNA methyltransferase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D2H9_9FIRM
rRNA methyltransferase {ECO:0000313|EMBL:CCX74455.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L1_008_000M1_scaffold_3368_7
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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8287..10419
DNA (2133bp) protein (711aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HJS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26262.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L1_008_000M1_scaffold_3368_8
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10806..11690)
DNA (885bp) protein (295aa)
serine O-acetyltransferase (EC:2.3.1.30)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GLA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26258.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L1_008_000M1_scaffold_3368_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11976..12683)
DNA (708bp) protein (236aa)
Putative hydrolase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GPA5_9FIRM
Putative hydrolase {ECO:0000313|EMBL:CDB26255.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative hydrolase
L1_008_000M1_scaffold_3368_10
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12680..13309)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GWZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26254.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L1_008_000M1_scaffold_3368_11
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13306..14931)
DNA (1626bp) protein (542aa)
Na+/H+ antiporter family protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HJR4_9FIRM
Na+/H+ antiporter family protein {ECO:0000313|EMBL:CDB26252.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
transporter, NhaC family (TC 2.A.35)
L1_008_000M1_scaffold_3368_12
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15202..16656)
DNA (1455bp) protein (485aa)
serine protease (EC:3.4.21.-)
Serine protease n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GYC7_9FIRM
Serine protease {ECO:0000313|EMBL:CDB26251.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L1_008_000M1_scaffold_3368_13
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16831..18420
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GP99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26250.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L1_008_000M1_scaffold_3368_14
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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18417..19382
DNA (966bp) protein (322aa)
Putative oxidoreductase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GWZ5_9FIRM
Putative oxidoreductase {ECO:0000313|EMBL:CDB26249.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative oxidoreductase
L1_008_000M1_scaffold_3368_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19483..20595)
DNA (1113bp) protein (371aa)
Ribosome-binding ATPase YchF n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M5S9_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
engD; GTP-dependent nucleic acid-binding protein EngD
Displaying 15 items

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