ggKbase home page

L1_008_000M1_scaffold_1303_15

Organism: dasL1_008_000M1_concoct_63_sub_fa

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: 19024..20364

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M4L2_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 64.0
  • Coverage: 445.0
  • Bit_score: 577
  • Evalue 6.60e-162
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:EOS65910.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.0
  • Coverage: 445.0
  • Bit_score: 577
  • Evalue 9.20e-162
RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 45.0
  • Coverage: 442.0
  • Bit_score: 345
  • Evalue 1.60e-92

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Oscillibacter sp. 1-3 → Oscillibacter → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1341
GTGAGCATCGTTTCCCTGAAGACGGAGCTGCGGCAGCAGATGAAGCTGACGCCCCAGCTGTTGCAATCTATAGAGCTCCTGCAAATGAATTCCCAGGAGCTGTTGAGTTATCTGGGCCGCATGGCTGAGGAAAATCCCACGCTGGAGCTTCAGGACGCGCCGGACATGGCGGATTCTCTTGTCCGGCTGCGGCAGAGGGCTGCGTGGCTGGATGCCGGAGTCCCGGGCTCTTTCCGCACTCACCGGGAGGACTCTGTGCTGGAGCCGGGAGCTCCGGACCGGAGTCTGAACAGTCTGAGCGCCTTTCTGTGCGACCAGCTGGACCGCAGACACCTGTCCGGTCCACTGCTGGCACTGACCAAATATATGGTGCAGCTGCTGGATGAGGACGGTTACCTGGCCCAGGAGGACCTGGACGGTCTGGCCGAACTGAAGATCCCGCAGGCCATGGTGGAGCAGGCGCTGGACATTCTGCAGTCTCTGGAGCCCGCTGGTGTAGGCGCCCGAGGCCTGTCGGAATGTCTGGTGCTTCAGCTGAGCCGCCAGAAAAACGCCGTTCCACATGCCATGGATATCGCTGCCCGCTTTCTGCCGGAGCTGGGGCGCAGGCACTACGGGCCCATCGTCAAGGCGCTGGGCATTTCCACGGCGGAGCTTCGGACAGCAGAAAAGGCCATTGCCGCCCTGGAACCCCGGCCGGGGCGGGCTTTTCAGCCGCAGGAGCCCATTGCTTTGGCACGTCCGGATGTGTTTGTTTTGGAAACGGACGGAGAGCTGCAGGTGGTGCTGAATGAGTTTTATCTGCCCAAGGTTTCCGTCAGTAGCTATTACAGCGACATGTCCAGATCCGTCGAGGATCAGGAGGCCCGTGCCTATCTGAAGGATAAGCTCCGGCAGGCCGCCTGGCTGCTGGACAGCCTGGAGCGCCGGGGGAATACGCTGCAGCGCTGCGCCCAGGCGATCTTAAACGCCCAGCAGCCATTTTTTCTGGGTCGGACCACGGAACTGGCTCCTATGAAGCTGACCTCTTTGGCAGAGGCGCTGGAGTTGCACCCGTCCACCGTTTCCCGGGCTGTTCGGGACAAGTATCTGCAATGCCGCCAGGGAACCTATCCGCTGCGGTATTTCCTCAGCCGGCCTGTGGGGCCCCAGGGGATATCCCGCCAGGCAGCAAAGCAGAGACTGCTGATCCATCTCCGGCAGGAGGACCCGGCCCATCCCCTTAGCGACCAGGCGTTGTGTGCGCTGCTGGAGCAGGAGGGCATCCATCTGGCCCGGCGGACGGTGGCCAAATACAGGATGGAGCAGGGAGTCGGACCCTCTGCTGTCCGGCGTGTATAG
PROTEIN sequence
Length: 447
VSIVSLKTELRQQMKLTPQLLQSIELLQMNSQELLSYLGRMAEENPTLELQDAPDMADSLVRLRQRAAWLDAGVPGSFRTHREDSVLEPGAPDRSLNSLSAFLCDQLDRRHLSGPLLALTKYMVQLLDEDGYLAQEDLDGLAELKIPQAMVEQALDILQSLEPAGVGARGLSECLVLQLSRQKNAVPHAMDIAARFLPELGRRHYGPIVKALGISTAELRTAEKAIAALEPRPGRAFQPQEPIALARPDVFVLETDGELQVVLNEFYLPKVSVSSYYSDMSRSVEDQEARAYLKDKLRQAAWLLDSLERRGNTLQRCAQAILNAQQPFFLGRTTELAPMKLTSLAEALELHPSTVSRAVRDKYLQCRQGTYPLRYFLSRPVGPQGISRQAAKQRLLIHLRQEDPAHPLSDQALCALLEQEGIHLARRTVAKYRMEQGVGPSAVRRV*