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L1_008_000M1_scaffold_1058

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1058_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

575..1936
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46175.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L1_008_000M1_scaffold_1058_2
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1950..3413
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Bacillus cereus VD196 RepID=R8H464_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EOO67619.1}; TaxID=1053243 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus VD196.;"
hypothetical protein
L1_008_000M1_scaffold_1058_3
unknown

Not on your lists

4054..4308
DNA (255bp) protein (85aa)

This feature has no annotations

L1_008_000M1_scaffold_1058_4
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4421..5035
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BIG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE46888.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
hypothetical protein
L1_008_000M1_scaffold_1058_5
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5220..6494)
DNA (1275bp) protein (425aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Serine--tRNA ligase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYQ3_CLOCD
L1_008_000M1_scaffold_1058_6
unknown

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comp(6518..7051)
DNA (534bp) protein (178aa)

This feature has no annotations

L1_008_000M1_scaffold_1058_7
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7215..8129)
DNA (915bp) protein (305aa)
ParB-like partition protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0E8_9CLOT
ParB-like partition protein {ECO:0000313|EMBL:EET85017.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
parB-like partition protein
L1_008_000M1_scaffold_1058_8
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8174..8941)
DNA (768bp) protein (256aa)
sporulation initiation inhibitor Soj n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EBBC
soj; sporulation initiation inhibitor protein Soj
Sporulation initiation inhibitor protein Soj {ECO:0000313|EMBL:AGC67043.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_008_000M1_scaffold_1058_9
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9080..9667)
DNA (588bp) protein (196aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Non-canonical purine NTP pyrophosphatase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYZ1_CLOCD
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
L1_008_000M1_scaffold_1058_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9674..10540)
DNA (867bp) protein (289aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
ksgA; 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium difficile F253 RepID=T4A4M9_CLODI
L1_008_000M1_scaffold_1058_11
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

10812..11498
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=root RepID=R6NPY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99702.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
amino acid ABC transporter permease
L1_008_000M1_scaffold_1058_12
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

11513..12235
DNA (723bp) protein (241aa)
Amino acid ABC transporter n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MJ76_9FIRM
Amino acid ABC transporter {ECO:0000313|EMBL:CDB99703.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
artM3; Arginine transport ATP-binding protein ArtM
L1_008_000M1_scaffold_1058_13
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

12269..13039
DNA (771bp) protein (257aa)
ABC-type transporter periplasmic subunit family 3 n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MLX1_9FIRM
ABC-type transporter periplasmic subunit family 3 {ECO:0000313|EMBL:CDB99705.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L1_008_000M1_scaffold_1058_14
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13598..14464
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZER8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ12310.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
hypothetical protein
L1_008_000M1_scaffold_1058_15
unknown

Not on your lists

14479..15141
DNA (663bp) protein (221aa)

This feature has no annotations

L1_008_000M1_scaffold_1058_16
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15309..15947
DNA (639bp) protein (213aa)
endo-1,4-beta-xylanase A precursor (EC:3.2.1.8)
S-layer protein n=1 Tax=Brevibacillus laterosporus RepID=UPI00036A254D
S-layer homology domain protein {ECO:0000313|EMBL:CCF13857.1}; TaxID=1118154 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus GI-9.;"
L1_008_000M1_scaffold_1058_17
unknown

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comp(16406..16798)
DNA (393bp) protein (131aa)

This feature has no annotations

L1_008_000M1_scaffold_1058_18
unknown

Not on your lists

comp(17260..17739)
DNA (480bp) protein (160aa)
ATP-binding region ATPase domain-containing protein
L1_008_000M1_scaffold_1058_19
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18066..18920)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=S2LK64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPC05333.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
integrase family protein
L1_008_000M1_scaffold_1058_20
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19261..19671
DNA (411bp) protein (137aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUD6_9CLOT
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EEG57309.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
transcriptional regulator family protein
L1_008_000M1_scaffold_1058_21
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19785..21080
DNA (1296bp) protein (432aa)
Cytochrome c-type biogenesis protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KJV0_9FIRM
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:EGN30755.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_008_000M1_scaffold_1058_22
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21159..21890
DNA (732bp) protein (244aa)
FeS assembly ATPase SufC n=1 Tax=Clostridium sp. CAG:964 RepID=R6U7I5_9CLOT
FeS assembly ATPase SufC {ECO:0000313|EMBL:CDC78004.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L1_008_000M1_scaffold_1058_23
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21844..22803
DNA (960bp) protein (320aa)
SufB/sufD domain protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBT9_9FIRM
SufB/sufD domain protein {ECO:0000313|EMBL:EDS71736.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L1_008_000M1_scaffold_1058_24
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23114..24235)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CMX9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00046.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
L1_008_000M1_scaffold_1058_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24529..24738
DNA (210bp) protein (70aa)
Protein translocase subunit SecE n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0R4_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
secE; SecE
L1_008_000M1_scaffold_1058_26
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24754..25281
DNA (528bp) protein (176aa)
Transcription termination/antitermination protein NusG n=2 Tax=Clostridium RepID=D8GJ53_CLOLD
NusG antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L1_008_000M1_scaffold_1058_27
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


25393..25818
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y011_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
LSU ribosomal protein L11P
L1_008_000M1_scaffold_1058_28
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25898..26593
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PSW9_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
rplA; 50S ribosomal protein L1
L1_008_000M1_scaffold_1058_29
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26741..27370
DNA (630bp) protein (210aa)
50S ribosomal protein L10 n=1 Tax=Clostridium sp. CAG:964 RepID=R6ULK9_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
rplJ; 50S ribosomal protein L10
L1_008_000M1_scaffold_1058_30
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27428..27799
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium tetani 12124569 RepID=U6EZM2_CLOTA
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368, ECO:0000313|EMBL:CDI50826.1}; TaxID=1231072 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani 12124569.;"
Displaying items 1-30 of 32 in total

View Taxonomy