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L1_008_000M1_scaffold_1622

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1622_1

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1558..1962
DNA (405bp) protein (135aa)
XRE family transcriptional regulator n=1 Tax=human gut metagenome RepID=K1URT4_9ZZZZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EKC74191.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Helix-turn-helix.
L1_008_000M1_scaffold_1622_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1999..2508
DNA (510bp) protein (170aa)
Putative toxin-antitoxin system, toxin component n=2 Tax=Clostridiales RepID=C0FZJ3_9FIRM
Putative toxin-antitoxin system, toxin component {ECO:0000313|EMBL:EEU97951.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L1_008_000M1_scaffold_1622_3
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3497..4768
DNA (1272bp) protein (424aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Clostridium bolteae 90A9 RepID=R0BX10_9CLOT
L1_008_000M1_scaffold_1622_4
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4827..5618)
DNA (792bp) protein (264aa)
Putative transcriptional regulator YfiF n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DTR4_9FIRM
Putative transcriptional regulator YfiF {ECO:0000313|EMBL:CCX83518.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
transcriptional regulator YfiF
L1_008_000M1_scaffold_1622_5
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6166..11508
DNA (5343bp) protein (1781aa)
Glycoside hydrolase family 3 domain protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DXC6_9FIRM
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:CCX83519.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
glycoside hydrolase
L1_008_000M1_scaffold_1622_6
Clostridium sp. SY8519, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11804..12727)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V8P2_CLOSS
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK46502.1}; TaxID=1042156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain SY8519).;"
L1_008_000M1_scaffold_1622_7
endosymbiont of Acanthamoeba sp. UWC8, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13462..18495
DNA (5034bp) protein (1678aa)
UPI0003DE77C4 related cluster n=1 Tax=unknown RepID=UPI0003DE77C4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF80789.1}; TaxID=86106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Holosporaceae.;" source="endosymbiont of Acanthamoeba sp. UWC8.;"
L1_008_000M1_scaffold_1622_8
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18575..19132)
DNA (558bp) protein (186aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Eubacterium sp. CAG:274 RepID=R6P944_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDC20868.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
N-acetylmuramoyl-L-alanine amidase
L1_008_000M1_scaffold_1622_9
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19617..20924
DNA (1308bp) protein (436aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=Clostridium thermocellum RepID=A3DHV1_CLOTH
L1_008_000M1_scaffold_1622_10
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21003..21764
DNA (762bp) protein (254aa)
Metallo-beta-lactamase superfamily hydrolase n=3 Tax=Clostridium acetobutylicum RepID=F0KAX6_CLOAE
Metallo-beta-lactamase superfamily hydrolase
Metallo-beta-lactamase superfamily hydrolase {ECO:0000313|EMBL:AAK81463.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
L1_008_000M1_scaffold_1622_11
unknown

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comp(22729..22995)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000374B7B1
L1_008_000M1_scaffold_1622_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23140..24870)
DNA (1731bp) protein (577aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=A7B723_RUMGN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ68525.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_1622_13
unknown

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comp(25873..27060)
DNA (1188bp) protein (396aa)

This feature has no annotations

L1_008_000M1_scaffold_1622_14
Clostridium sp. CAG:710, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27183..27761)
DNA (579bp) protein (193aa)
Transcriptional regulator TetR family n=1 Tax=Clostridium sp. CAG:710 RepID=R5T2R0_9CLOT
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCZ59828.1}; TaxID=1262833 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:710.;"
transcriptional regulator, TetR family
L1_008_000M1_scaffold_1622_15
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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27992..30463
DNA (2472bp) protein (824aa)
Uncharacterized protein n=2 Tax=root RepID=R6MLT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99655.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1622_16
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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30489..34028
DNA (3540bp) protein (1180aa)
The GLUG motif subfamily n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NPV3_9FIRM
The GLUG motif subfamily {ECO:0000313|EMBL:CDB99657.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1622_17
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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34201..34359
DNA (159bp) protein (53aa)
Rubredoxin n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H7I2_9FIRM
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
rub; rubredoxin Rub
L1_008_000M1_scaffold_1622_18
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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35108..36829
DNA (1722bp) protein (574aa)
alpha-phosphoglucomutase (EC:5.4.2.2)
Alpha-phosphoglucomutase {ECO:0000313|EMBL:ACL70490.1}; EC=5.4.2.2 {ECO:0000313|EMBL:ACL70490.1};; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
Alpha-phosphoglucomutase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CYX1_HALOH
Displaying 18 items

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