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L1_008_000M1_scaffold_2059

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2059_1
unknown

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comp(3..146)
DNA (144bp) protein (48aa)

This feature has no annotations

L1_008_000M1_scaffold_2059_2
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(257..1243)
DNA (987bp) protein (329aa)
Peptidase S58 DmpA n=1 Tax=Eubacterium sp. CAG:274 RepID=R6QBB3_9FIRM
Peptidase S58 DmpA {ECO:0000313|EMBL:CDC19187.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
peptidase S58 DmpA
L1_008_000M1_scaffold_2059_3
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1253..3568)
DNA (2316bp) protein (772aa)
Acyl-coenzyme A synthetases/AMP-(Fatty) acid ligases n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A662_9CLOT
Acyl-coenzyme A synthetases/AMP-(Fatty) acid ligases {ECO:0000313|EMBL:CCX38388.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
L1_008_000M1_scaffold_2059_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3688..6543)
DNA (2856bp) protein (952aa)
UvrABC system protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2E7_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
uvrA; UvrABC system protein A
L1_008_000M1_scaffold_2059_5
Caldicellulosiruptor owensensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(6570..8537)
DNA (1968bp) protein (656aa)
UvrABC system protein B n=1 Tax=Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) RepID=E4Q1P1_CALOW
excinuclease ABC subunit B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=632518 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL).;"
L1_008_000M1_scaffold_2059_6
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8772..11141
DNA (2370bp) protein (790aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Roseburia RepID=C0FQM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29024.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Signal transduction histidine kinase
L1_008_000M1_scaffold_2059_7
unknown

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comp(11170..11613)
DNA (444bp) protein (148aa)

This feature has no annotations

L1_008_000M1_scaffold_2059_8
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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11742..13790
DNA (2049bp) protein (683aa)
Penicillin-binding protein 1A family n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MC84_9FIRM
Penicillin-binding protein 1A family {ECO:0000313|EMBL:CDB97213.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
putative penicillin-binding protein
L1_008_000M1_scaffold_2059_9
unknown

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comp(13889..14110)
DNA (222bp) protein (74aa)

This feature has no annotations

L1_008_000M1_scaffold_2059_10
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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14400..14921
DNA (522bp) protein (174aa)
Helix-turn-helix domain protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U5J4_ETHHY
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADU25661.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L1_008_000M1_scaffold_2059_11
unknown

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14991..15914
DNA (924bp) protein (308aa)

This feature has no annotations

L1_008_000M1_scaffold_2059_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16548..16832)
DNA (285bp) protein (95aa)
Sporulation transcriptional activator Spo0A n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U2J5_ETHHY
spo0A; Stage 0 sporulation protein A homolog
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Displaying 12 items

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