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L1_008_000M1_scaffold_353

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_353_1
unknown

Not on your lists

comp(396..572)
DNA (177bp) protein (59aa)

This feature has no annotations

L1_008_000M1_scaffold_353_2
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

954..1136
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MEG6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94394.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
putative transcriptional regulator
L1_008_000M1_scaffold_353_3
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1853..2074
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TNM0_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR47788.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
L1_008_000M1_scaffold_353_4
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2328..2561
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TNM0_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR47788.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
L1_008_000M1_scaffold_353_5
unknown

Not on your lists

3302..3571
DNA (270bp) protein (90aa)

This feature has no annotations

L1_008_000M1_scaffold_353_6
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

comp(3905..5305)
DNA (1401bp) protein (467aa)
HTH-type transcriptional regulatory protein GabR n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5Y0L2_9FIRM
HTH-type transcriptional regulatory protein GabR {ECO:0000313|EMBL:CDA14756.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
GntR family transcriptional regulator
L1_008_000M1_scaffold_353_7
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5491..11898
DNA (6408bp) protein (2136aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PRM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC21156.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
hypothetical protein
L1_008_000M1_scaffold_353_8
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12031..14493
DNA (2463bp) protein (821aa)
ATPase with chaperone activity, ATP-binding subunit n=1 Tax=Clostridium sp. BNL1100 RepID=H2JFJ5_9CLOT
ATPase with chaperone activity, ATP-binding subunit {ECO:0000313|EMBL:AEY66689.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
chaperone ATPase
L1_008_000M1_scaffold_353_9
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14535..15329)
DNA (795bp) protein (265aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
Pyrroline-5-carboxylate reductase n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I2W3_CLOCE
pyrroline-5-carboxylate reductase
L1_008_000M1_scaffold_353_10
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15357..16784)
DNA (1428bp) protein (476aa)
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Adenylosuccinate lyase n=7 Tax=Clostridium thermocellum RepID=A3DDE7_CLOTH
L1_008_000M1_scaffold_353_11
unknown

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comp(16833..17048)
DNA (216bp) protein (72aa)

This feature has no annotations

L1_008_000M1_scaffold_353_12
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17672..18067)
DNA (396bp) protein (132aa)
UPF0102 protein HMPREF9129_1961 n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D6D1_9FIRM
UPF0102 protein HMPREF9129_1961 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 29427.;"
conserved hypothetical protein TIGR00252
L1_008_000M1_scaffold_353_13
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18083..18709)
DNA (627bp) protein (209aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:557 RepID=R6GQW2_9CLOT
L1_008_000M1_scaffold_353_14
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18711..19592)
DNA (882bp) protein (294aa)
GTPase YlqF n=1 Tax=Ruminococcus flavefaciens RepID=UPI000305E98C
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
ribosome biogenesis GTP-binding protein YlqF
L1_008_000M1_scaffold_353_15
Selenomonas sp. oral taxon 892, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19664..21028)
DNA (1365bp) protein (455aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1321786 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon 892 str. F0426.;"
Signal peptidase I n=1 Tax=Selenomonas sp. oral taxon 892 str. F0426 RepID=U2M2E9_9FIRM
lepB; Signal peptidase I
L1_008_000M1_scaffold_353_16
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21106..21486)
DNA (381bp) protein (127aa)
50S ribosomal protein L19 n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H2H3_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
50S ribosomal protein L19
L1_008_000M1_scaffold_353_17
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21649..22596)
DNA (948bp) protein (316aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium termitidis CT1112 RepID=S0FTR4_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
signal recognition particle-docking protein FtsY
L1_008_000M1_scaffold_353_18
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(22596..26156)
DNA (3561bp) protein (1187aa)
Chromosome partition protein Smc n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKT6_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
chromosome segregation protein SMC
L1_008_000M1_scaffold_353_19
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26456..28822
DNA (2367bp) protein (789aa)
ribonucleoside-triphosphate reductase class III catalytic subunit (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Clostridium sp. CAG:964 RepID=R6U0B0_9CLOT
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDC79118.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
L1_008_000M1_scaffold_353_20
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(29604..30704)
DNA (1101bp) protein (367aa)
Glycosyl hydrolase family 88 n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S4V2_CALKI
glycosyl hydrolase family 88
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:ADQ41452.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 /; I77R1B).;"
L1_008_000M1_scaffold_353_21
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30960..31805
DNA (846bp) protein (282aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IDT3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60343.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
sugar phosphate isomerase/epimerase
L1_008_000M1_scaffold_353_22
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31832..32515
DNA (684bp) protein (228aa)
XRE family transcriptional regulator n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G574_CLOPA
sugar fermentation stimulation protein A
Sugar fermentation stimulation protein homolog {ECO:0000255|HAMAP-Rule:MF_00095}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L1_008_000M1_scaffold_353_23
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34082..34756)
DNA (675bp) protein (225aa)
Single-strand binding protein/Primosomal replication protein n n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I248_CLOCE
single-stranded DNA-binding protein
Single-strand binding protein/Primosomal replication protein n {ECO:0000313|EMBL:ACL75874.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L1_008_000M1_scaffold_353_24
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34749..35558)
DNA (810bp) protein (270aa)
Polysaccharide deacetylase, PdaB family n=2 Tax=Clostridiales RepID=G9YN65_9FIRM
Polysaccharide deacetylase family sporulation protein PdaB {ECO:0000313|EMBL:EHO31622.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
polysaccharide deacetylase
L1_008_000M1_scaffold_353_25
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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35744..36097
DNA (354bp) protein (118aa)
Transcriptional regulator, Spx/MgsR family n=1 Tax=Ruminococcus albus 8 RepID=E9SC52_RUMAL
Transcriptional regulator, Spx/MgsR family {ECO:0000313|EMBL:EGC03192.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
arsenate reductase
L1_008_000M1_scaffold_353_26
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36122..36778)
DNA (657bp) protein (219aa)
Pentapeptide repeat protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CC18_9FIRM
Pentapeptide repeat protein {ECO:0000313|EMBL:EDS71815.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
hypothetical protein
L1_008_000M1_scaffold_353_27
unknown

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36868..37272
DNA (405bp) protein (135aa)

This feature has no annotations

L1_008_000M1_scaffold_353_28
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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37305..39893
DNA (2589bp) protein (863aa)
Putative translation elongation factor G n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ40_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:EDM98689.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
small GTP-binding protein domain
L1_008_000M1_scaffold_353_29
unknown

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40215..40421
DNA (207bp) protein (69aa)

This feature has no annotations

L1_008_000M1_scaffold_353_30
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40423..40671
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:557 RepID=R6GG44_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24851.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Displaying items 1-30 of 47 in total

View Taxonomy