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L1_008_000M1_scaffold_356

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_356_1
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..2716)
DNA (2715bp) protein (905aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LD20_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL17515.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_356_2
Thermoanaerobacter sp. YS13, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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3558..3998
DNA (441bp) protein (147aa)
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:KHO61449.1}; EC=5.3.1.6 {ECO:0000313|EMBL:KHO61449.1};; TaxID=1511746 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter sp. YS13.;"
Sugar-phosphate isomerase, RpiB/LacA/LacB family n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MW03_9THEO
RpiB/LacA/LacB family sugar-phosphate isomerase
L1_008_000M1_scaffold_356_3
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4177..4884
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GMD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY13937.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
hypothetical protein
L1_008_000M1_scaffold_356_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4891..5295
DNA (405bp) protein (135aa)
UPI0003D65945 related cluster n=1 Tax=unknown RepID=UPI0003D65945
Uncharacterized protein {ECO:0000313|EMBL:ETI90527.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein DUF3284
L1_008_000M1_scaffold_356_5
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6093..7445
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W3W3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37842.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
hypothetical protein
L1_008_000M1_scaffold_356_6
Lactobacillus ruminis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(8580..8876)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Lactobacillus ruminis SPM0211 RepID=F7R2M8_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EGM50278.1}; TaxID=1040964 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus ruminis SPM0211.;"
hypothetical protein
L1_008_000M1_scaffold_356_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9060..9641
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64301.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
NADH:ubiquinone oxidoreductase 24 kD subunit
L1_008_000M1_scaffold_356_8
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9654..11336
DNA (1683bp) protein (561aa)
PAS sensor protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2CCBA
PAS/PAC sensor protein
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ABN51664.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_008_000M1_scaffold_356_9
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11329..12498
DNA (1170bp) protein (390aa)
serine/threonine phosphatase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2CCB9
serine phosphatase
Stage II sporulation protein E {ECO:0000313|EMBL:ABN51665.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_008_000M1_scaffold_356_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12561..14012
DNA (1452bp) protein (484aa)
Iron only hydrogenase large subunit C-terminal domain n=1 Tax=Clostridium sp. CAG:413 RepID=R6PI38_9CLOT
Iron only hydrogenase large subunit C-terminal domain {ECO:0000313|EMBL:CDC09442.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Iron only hydrogenase large subunit, C-terminal domain
L1_008_000M1_scaffold_356_11
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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14115..14282
DNA (168bp) protein (56aa)
Dissimilatory sulfite reductase (Desulfoviridin) alpha and beta subunits n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U3S3_9FIRM
Dissimilatory sulfite reductase (Desulfoviridin) alpha and beta subunits {ECO:0000313|EMBL:CDC74746.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L1_008_000M1_scaffold_356_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14411..14668)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78496.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphotransferase System HPr (HPr) Family
L1_008_000M1_scaffold_356_13
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15035..18265)
DNA (3231bp) protein (1077aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01452}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01452};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01452};; ATP-dependent helicase/nuclease AddB {ECO:0000255|HAMAP-Rule:MF_01452}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Clostridium acetobutylicum RepID=ADDB_CLOAB
addB; ATP-dependent exonuclease synthesis protein AddB (superfamily I helicase)
L1_008_000M1_scaffold_356_14
RIFOXYA2_FULL_RIF01_40_8_curated, RIF1, Bacteria

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comp(18278..18919)
DNA (642bp) protein (214aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 id=4209780 bin=GWF2_Planctomycetes_42_9 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
HAD-superfamily hydrolase
Tax=RIFOXYA2_FULL_RIF01_40_8_curated
L1_008_000M1_scaffold_356_15
Anaerovibrio lipolyticus, Anaerovibrio, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19095..21086
DNA (1992bp) protein (664aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; Flags: Fragment;; TaxID=82374 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Anaerovibrio.;" source="Anaerovibrio lipolyticus.;"
apu; amylopullulanase Apu (EC:3.2.1.1 3.2.1.41)
Pullulanase n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EF34_9FIRM
L1_008_000M1_scaffold_356_16
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

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21129..22505
DNA (1377bp) protein (459aa)
Potassium uptake protein, TrkH family n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8C5_9FIRM
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EDS73262.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
TrkH family potassium uptake protein
L1_008_000M1_scaffold_356_17
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

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22538..23188
DNA (651bp) protein (217aa)
TrkA N-terminal domain protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8C6_9FIRM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EDS73263.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
TrkA-N
L1_008_000M1_scaffold_356_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23551..23880
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JR86_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95605.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_356_19
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23941..25662)
DNA (1722bp) protein (574aa)
Ammonium transporter n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VWI7_9CLOT
Ammonium transporter {ECO:0000313|EMBL:EOQ35292.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
ammonium transporter
L1_008_000M1_scaffold_356_20
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25819..27915)
DNA (2097bp) protein (699aa)
glnA3-2; Type-3 glutamine synthetase (EC:6.3.1.2)
Type-3 glutamine synthetase {ECO:0000313|EMBL:CDZ23919.1}; EC=6.3.1.2 {ECO:0000313|EMBL:CDZ23919.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Glutamate--ammonia ligase, catalytic domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH2_9CLOT
L1_008_000M1_scaffold_356_21
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29009..29248)
DNA (240bp) protein (80aa)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ET92_9FIRM
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:CDE05835.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L1_008_000M1_scaffold_356_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29283..29978)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM41821.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
yabN; putative protein YabN
L1_008_000M1_scaffold_356_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29994..31778)
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46444.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spoVB; stage V sporulation protein B
L1_008_000M1_scaffold_356_24
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31946..32503)
DNA (558bp) protein (186aa)
PAP2 family phosphoesterase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4QZH4_9CLOT
PAP2 family phosphoesterase {ECO:0000313|EMBL:EPR09528.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
membrane-associated phospholipid phosphatase
L1_008_000M1_scaffold_356_25
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32629..33396
DNA (768bp) protein (256aa)
Phosphoribosyltransferase n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=B9MKB5_CALBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23440.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L1_008_000M1_scaffold_356_26
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34004..34438
DNA (435bp) protein (145aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.59)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKP0_9FIRM
L1_008_000M1_scaffold_356_27
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

35322..37106
DNA (1785bp) protein (595aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
pckG; Phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MEU1_9FIRM
L1_008_000M1_scaffold_356_28
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37194..38066)
DNA (873bp) protein (291aa)
PPK2 family polyphosphate:nucleotide phosphotransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38605.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_008_000M1_scaffold_356_29
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38266..40437
DNA (2172bp) protein (724aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
DNA topoisomerase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHP9_9CLOT
DNA topoisomerase III
L1_008_000M1_scaffold_356_30
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(41414..41878)
DNA (465bp) protein (155aa)
Transcription activator effector binding protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JJU3_CELLD
transcription activator effector binding protein
Transcription activator effector binding protein {ECO:0000313|EMBL:ADZ83225.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Displaying items 1-30 of 43 in total

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