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L1_008_000M1_scaffold_981

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_981_1
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..4208)
DNA (4206bp) protein (1402aa)
RHS repeat-associated core domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AWV3_9CLOT
YD repeat (Two copies) {ECO:0000313|EMBL:EHO22364.1}; Flags: Fragment;; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Rhs family protein
L1_008_000M1_scaffold_981_2
unknown

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comp(4201..5247)
DNA (1047bp) protein (349aa)

This feature has no annotations

L1_008_000M1_scaffold_981_3
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5685..5873
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NIR5_9FIRM
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
LSU ribosomal protein L28P
L1_008_000M1_scaffold_981_4
unknown

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comp(5847..6110)
DNA (264bp) protein (88aa)

This feature has no annotations

L1_008_000M1_scaffold_981_5
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6068..7075)
DNA (1008bp) protein (336aa)
iron-only hydrogenase maturation protein HydE (EC:2.8.1.6)
Iron-only hydrogenase maturation protein HydE n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MY60_9FIRM
Iron-only hydrogenase maturation protein HydE {ECO:0000313|EMBL:CCY96690.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_981_6
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7082..8269)
DNA (1188bp) protein (396aa)
Hydrogenase maturation GTPase HydF n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H802_9CLOT
Hydrogenase maturation GTPase HydF {ECO:0000313|EMBL:EEH98498.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hydF; [FeFe] hydrogenase H-cluster maturation GTPase HydF
L1_008_000M1_scaffold_981_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8425..8658
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YWQ3_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93391.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_008_000M1_scaffold_981_8
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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8655..8921
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GLE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25270.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
holin, SPP1 family
L1_008_000M1_scaffold_981_9
Thermoanaerobacter sp. YS13, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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8918..9799
DNA (882bp) protein (294aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:KHO62664.1}; EC=3.5.1.28 {ECO:0000313|EMBL:KHO62664.1};; TaxID=1511746 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter sp. YS13.;"
N-acetylmuramoyl-L-alanine amidase family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W1N3_CLOBI
N-acetylmuramoyl-L-alanine amidase
L1_008_000M1_scaffold_981_10
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10616..10894
DNA (279bp) protein (93aa)
Transcriptional regulator XRE family n=1 Tax=Clostridium clostridioforme CAG:511 RepID=R7PJQ8_9CLOT
Transcriptional regulator XRE family {ECO:0000313|EMBL:CDF24523.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
hypothetical protein
L1_008_000M1_scaffold_981_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10926..11102
DNA (177bp) protein (59aa)
Helix-turn-helix n=2 Tax=Ruminococcus RepID=D4L594_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL14789.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_981_12
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11849..12493)
DNA (645bp) protein (215aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
endonuclease III, DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18 3.2.2.-)
Endonuclease III n=1 Tax=Clostridium termitidis CT1112 RepID=S0FXZ8_9CLOT
L1_008_000M1_scaffold_981_13
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12605..13843
DNA (1239bp) protein (413aa)
glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000255|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000255|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000255|HAMAP-Rule:MF_00051};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Serine hydroxymethyltransferase n=7 Tax=Clostridium thermocellum RepID=GLYA_CLOTH
L1_008_000M1_scaffold_981_14
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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13803..15122
DNA (1320bp) protein (440aa)
Predicted ATPase related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NLL4_9FIRM
Predicted ATPase related to the helicase subunit of the Holliday junction resolvase {ECO:0000313|EMBL:CDB98612.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
AAA ATPase
L1_008_000M1_scaffold_981_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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16320..16580
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M3W8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65361.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L1_008_000M1_scaffold_981_16
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(17350..18951)
DNA (1602bp) protein (534aa)
Carbohydrate kinase FGGY n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V3G5_9FIRM
Carbohydrate kinase FGGY {ECO:0000313|EMBL:CDC92698.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
carbohydrate kinase FGGY
L1_008_000M1_scaffold_981_17
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19414..19599)
DNA (186bp) protein (62aa)
GNAT family acetyltransferase n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B3FEFC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL33396.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L1_008_000M1_scaffold_981_18
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19776..19964)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N742_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS75847.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
L1_008_000M1_scaffold_981_19
Eggerthella sp. CAG:298, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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comp(20112..20585)
DNA (474bp) protein (158aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=1262876 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:298.;"
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Eggerthella sp. CAG:298 RepID=R7B4N5_9ACTN
L1_008_000M1_scaffold_981_20
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20597..21280)
DNA (684bp) protein (228aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
7-cyano-7-deazaguanine synthase n=1 Tax=Clostridium sp. CAG:75 RepID=R5SMM3_9CLOT
preQ(0) biosynthesis protein QueC
L1_008_000M1_scaffold_981_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21297..21890)
DNA (594bp) protein (198aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 n=2 Tax=Clostridiales RepID=R5TNK5_9FIRM
L1_008_000M1_scaffold_981_22
Roseburia sp. CAG:471, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21893..22573)
DNA (681bp) protein (227aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1262948 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:471.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Roseburia sp. CAG:471 RepID=R7EBY4_9FIRM
Organic radical activating enzymes
L1_008_000M1_scaffold_981_23
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(22575..22997)
DNA (423bp) protein (141aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WEG3_FUSMR
Queuosine biosynthesis protein QueD {ECO:0000313|EMBL:EEO36269.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;"
queD; queuosine biosynthesis protein QueD
L1_008_000M1_scaffold_981_24
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23268..25154)
DNA (1887bp) protein (629aa)
RNA-metabolising metallo-beta-lactamase n=7 Tax=Clostridium thermocellum RepID=A3DF05_CLOTH
RNA-metabolising metallo-beta-lactamase
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:ABN52534.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_008_000M1_scaffold_981_25
unknown

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comp(25720..26985)
DNA (1266bp) protein (422aa)

This feature has no annotations

L1_008_000M1_scaffold_981_26
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28286..30265
DNA (1980bp) protein (660aa)
DNA gyrase subunit B domain protein n=7 Tax=Clostridium thermocellum RepID=A3DC64_CLOTH
DNA gyrase subunit B domain-containing protein
DNA gyrase subunit B domain protein {ECO:0000313|EMBL:ABN51543.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_008_000M1_scaffold_981_27
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30286..32475
DNA (2190bp) protein (730aa)
gyrA1; DNA gyrase subunit A (EC:5.99.1.3)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
DNA gyrase subunit A n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VS14_CLOSH
L1_008_000M1_scaffold_981_28
unknown

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comp(32973..34280)
DNA (1308bp) protein (436aa)

This feature has no annotations

L1_008_000M1_scaffold_981_29
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34348..39015)
DNA (4668bp) protein (1556aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GMA0_EUBLK
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ADO36728.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_981_30
unknown

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comp(39281..39724)
DNA (444bp) protein (148aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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