ggKbase home page

L1_008_000M1_scaffold_123_11

Organism: dasL1_008_000M1_concoct_89_fa

near complete RP 47 / 55 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(12732..16559)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 71.8
  • Coverage: 1272.0
  • Bit_score: 1854
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.8
  • Coverage: 1272.0
  • Bit_score: 1854
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUM2_CLOCD similarity UNIREF
DB: UNIREF100
  • Identity: 71.8
  • Coverage: 1272.0
  • Bit_score: 1854
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

[Clostridium] clariflavum → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3828
ATGGTACATCCTGTGAAACTAGGCGAAAACACACGTATGAGTTACGGTAAAATCAATGAGGTTTTGGAAATGCCGAACTTGATTGAGATACAAACCAATTCATACAAATGGTTTTTGAGTGAAGGACTGAAGGAGGTCTTTCATGACGTTTCTCCCATAACGGATTATACCGGAAATCTTATTTTGGAGTTTATTGACTATAGATTAGAGTCAAAGCCGAAATATGATATTGAGGAATGTAAAGAAAGAGATGCAACATACGCAGCACCTCTCAGGGTAAAAGTTCGTCTGATAAACAAAGAGTCGGGCGAGGTTAAAGAACAGGAGATATTCATGGGCGATTTTCCGCTTATGACTCCGTCGGGTACGTTTATTATAAACGGAGCTGAGCGTGTTATCGTGTCTCAGCTTGTTCGCGCGCCCAGCGTATATTATGCTCAGGATTATGATAAGCTGGGCAAAAAGCTGTTTACGTCTCAGGTTATACCAAACCGCGGCGCGTGGCTTGAGTATGAGACTGACAGCAATGATATTTATTATGTAAGAATCGACAGAACCAGAAAAATTCCTGTGACCGTGTTAATACGTGCTTTGGGATTTGGTACTGACGCTGAAATTATAGATTTGTTTGGTGAGGATGAACGCCTTATCGCAACAATGGAGAAAGATACAACCAAGACCCACGAAGAGGGTCTGCTTGAAGTGTACAGAAGACTGCGTCCGGGCGAGCCGCCTACTGTTGACAGTGCTCAGTCTTTGATTTCCAGCACCTTCTTTGATCCGAAAAGATACGATATGGCTAAAGTCGGCAGATATAAGTACAACAAAAAGCTGATGTTAAGCGATAGGGTTACGGGTCATGTATCGGCTGAGAATATTATCAGCCCTGTTACCGGTGAAATTCTGTGTGAGGCCGGTCAGACAATTACAAAAGAAATTGCTCACAGTCTTGAGATAAATGCTGTTAACGAGGTCGTTTTAGACTGTGACGGCAAACAGACGAAGGTTATTTCAAACAATATGGTTGATATGCCTGAGTATATTTTGAATAAAATAGGCGAAGAGCTCAGCTACAGTCCGCGCGAGTGCGGAATTACCGAGCGTGTCAGACGCAGCGTGCTTGATGAAATTTTAGACCAGTTCGGAGATCCGAATTCTGACGAGTTTAAAACAGCTGTTGAGGACAGACGCGACGAGCTTCAGCCTAAGCATGTGCTTATTGATGATATTATAGCGTCTATGTCATATATCGGTAATCTTGCAAACGGAGTAGGCGAAGTTGACGATATCGACCATTTGGGCAACAGAAGAATAAGAAGCGTTGGAGAACTGCTTCAAAACCAGTTTAGAATAGGTCTTTCAAGAATGGAACGTGTGGTTCGTGAAAGAATGACCACATCTGACCTTGATTCTATTACTCCGCAGTCTTTGATTAATATAAGACCGGTAACTTCCGCAATAAAAGAGTTCTTTGGTTCTTCTCAGCTTTCACAGTTTATGGATCAGATTAACCCTCTCGGCGAGCTGACTCATAAAAGAAGACTGTCAGCGCTGGGACCCGGCGGTCTGTCAAGAGAACGTGCCGGATACGAAGTGCGTGACGTTCACCATTCTCATTACGGCCGTATGTGTCCTATTGAGACCCCTGAAGGTCCTAATATCGGACTTATCAACTCGCTAAGCGGATTTGCCAGAGTTAACGAGTATGGTTTTATCGAAACTCCATACAGAAGAGTTGACCATGAGAAAATGATTGTCACTGATGAAGTGACTTATATGACAGCCGATTATGAAGAAGGTTTTTATGTTGCTCAGGCAAACGAGCCTTTGAATGATGACGGTTCATTTGTGAACAAGAAAATTGTCACTAGATATAAAGATGAATTTATAGAAGTTCCGCCTGAAAGGGTGGACTATATGGACGTATCCCCGAGACAGGTTACATCTATAGCTACAGCTATGATTCCATTCCTTGAGAACGATGACGCTAACCGTGCTCTGATGGGTTCAAACATGCAGCGTCAGGCGGTTCCGCTTTTGGTTCCTGAGTCTCCTATCATTGGTACGGGTATGGAATATAAAGCCGCTAAAGACTCAGGCGTTTGTGTTCTTGCCAAAAGAGACGGAACAGTTTCCCGTGTGTCTGCCACAAGAATAGAAGTTAAGACAGACGACGGCGATACGGACACATATAAGCTTATAAAATTCAAGCGTTCCAACCAGGGAATGTGTATAAACCAAAAACCTATAGTTGAAAAGGGTCAAAAGGTAAAGGAAGGTCAGATAATAGCTGACGGTCCGTCTACTAGAAACGGCGAGATAGGTCTTGGAAGAAATATTCGAATGGCGTTTATGACCTGGGAAGGTTACAATTACGAGGACGCTATTCTAATCAGCGAGGAACTGGTTAAAGAGGACGTATTCACTTCTATTCATATCGAGGAATATGAGGTAGACGCCAGAGATACAAAATTAGGACCTGAAGAGATAACAAGAGATATACCGAATATTGGCGAAGAAGCGCTTAAAGACCTTGACGAGAGGGGTATAATCCGCGTCGGCGCCGAGGTTGAGAGCGGAGATATTTTGGTTGGAAAGGTTACTCCTAAGGGAGAAACCGAACTCACTGCCGAAGAGAGACTTCTGCGTGCTATATTCGGAGAAAAAGCCCGTGAGGTAAGAGATACTTCATTGAGAGTGCCCCATGGAGAATATGGAATTATAGTTGATGTAAAGGTGTTTACAAGGGCTAACGGAGATGAATTGCCGCCGGGAGTTAATCAGGTAGTCCGCTGCTATATCGCACAGAAGAGAAAGATTTCTGTCGGTGATAAGATGGCAGGACGTCATGGTAATAAGGGTGTTGTATCGCGTATACTGCCGGTTGAAGATATGCCGTTCCTTCCTGACGGAACACCGCTTCAGATAGTTCTGAACCCTCTAGGCGTACCTTCGCGTATGAACATTGGACAGGTTCTTGAGGTTCATTTGGGTTATGCCGCTAAGGCTCTGGGCTGGAAGGTTGCCACCCCGGTATTTGACGGTGCAACAGAGGAAGATATAATGGAAGCCTTAAAAGAGGCCGGATACAACGAAGACGGAAAGAGCGTCCTCTATGACGGAAGAACAGGAGAACCGTTTGATAACAGGGTAACGGTAGGTTACATGCACATGCTGAAACTCGCCCATCTTGTTGATGATAAAATCCATGCCCGTTCAACCGGACCTTACTCGCTTGTCACTCAGCAGCCGCTGGGAGGTAAAGCGCAGTTCGGCGGACAGCGTTTCGGAGAAATGGAAGTTTGGGCTCTTGAAGCTTACGGCGCGGCTTATACGCTTCAGGAGATACTGACGGTTAAGTCGGATGATGTTGTCGGACGTGTTAAGACTTACGAAGCAATAGTTAAGGGTGAAAATGTTCCTGAGCCGGGAGTTCCTGAGTCGTTTAAGGTATTAATAAAAGAATTGCAGAGCTTGGCTCTTGATATTAAAGTCCTTGACGGAGACGGAAATGAGGTTATACTTCGTGAAACTCTCGATGATGACGAGGTTGAGGAATTGCCTGTTAACATTGCCGGATTTGAGGACGATGAACTCGTTCAGGCTAAGGCGGCTGAACCGGAAGATGAACTTTTGGCAGAAGAAGAGGCTGATGAAGAAGAGACTGAAAGCGATATAATTGACGAGGTAACTCAGATTTTGGCGGCTCCTTTGATTCAGGAAGGCGACGCTGACGTTTCAGCTTTTGAGGACGACGAGGATGTTAAGTCATTTGAAGAATTGAGAGATGCAGAAGATTTTGATGATGAAGACGACGATAATTACTAA
PROTEIN sequence
Length: 1276
MVHPVKLGENTRMSYGKINEVLEMPNLIEIQTNSYKWFLSEGLKEVFHDVSPITDYTGNLILEFIDYRLESKPKYDIEECKERDATYAAPLRVKVRLINKESGEVKEQEIFMGDFPLMTPSGTFIINGAERVIVSQLVRAPSVYYAQDYDKLGKKLFTSQVIPNRGAWLEYETDSNDIYYVRIDRTRKIPVTVLIRALGFGTDAEIIDLFGEDERLIATMEKDTTKTHEEGLLEVYRRLRPGEPPTVDSAQSLISSTFFDPKRYDMAKVGRYKYNKKLMLSDRVTGHVSAENIISPVTGEILCEAGQTITKEIAHSLEINAVNEVVLDCDGKQTKVISNNMVDMPEYILNKIGEELSYSPRECGITERVRRSVLDEILDQFGDPNSDEFKTAVEDRRDELQPKHVLIDDIIASMSYIGNLANGVGEVDDIDHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMTTSDLDSITPQSLINIRPVTSAIKEFFGSSQLSQFMDQINPLGELTHKRRLSALGPGGLSRERAGYEVRDVHHSHYGRMCPIETPEGPNIGLINSLSGFARVNEYGFIETPYRRVDHEKMIVTDEVTYMTADYEEGFYVAQANEPLNDDGSFVNKKIVTRYKDEFIEVPPERVDYMDVSPRQVTSIATAMIPFLENDDANRALMGSNMQRQAVPLLVPESPIIGTGMEYKAAKDSGVCVLAKRDGTVSRVSATRIEVKTDDGDTDTYKLIKFKRSNQGMCINQKPIVEKGQKVKEGQIIADGPSTRNGEIGLGRNIRMAFMTWEGYNYEDAILISEELVKEDVFTSIHIEEYEVDARDTKLGPEEITRDIPNIGEEALKDLDERGIIRVGAEVESGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEYGIIVDVKVFTRANGDELPPGVNQVVRCYIAQKRKISVGDKMAGRHGNKGVVSRILPVEDMPFLPDGTPLQIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKVATPVFDGATEEDIMEALKEAGYNEDGKSVLYDGRTGEPFDNRVTVGYMHMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLALDIKVLDGDGNEVILRETLDDDEVEELPVNIAGFEDDELVQAKAAEPEDELLAEEEADEEETESDIIDEVTQILAAPLIQEGDADVSAFEDDEDVKSFEELRDAEDFDDEDDDNY*