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L1_008_000M1_scaffold_123

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_123_1
unknown

Not on your lists

comp(600..923)
DNA (324bp) protein (108aa)

This feature has no annotations

L1_008_000M1_scaffold_123_2
RBG_16_Ignavibacteria_36_9_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(964..1440)
DNA (477bp) protein (159aa)
Tax=RBG_16_Ignavibacteria_36_9_curated
L1_008_000M1_scaffold_123_3
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1469..2113)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5SGD6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ52168.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
hypothetical protein
L1_008_000M1_scaffold_123_4
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2686..3033)
DNA (348bp) protein (116aa)
Redox-active disulfide protein 2 n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CKX1_9CLOT
Redox-active disulfide protein 2 {ECO:0000313|EMBL:ERI67966.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L1_008_000M1_scaffold_123_5
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3053..4066)
DNA (1014bp) protein (338aa)
Putative permease n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B6U2_9CLOT
Putative permease {ECO:0000313|EMBL:ERI67965.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Predicted permeases
L1_008_000M1_scaffold_123_6
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4150..4455)
DNA (306bp) protein (102aa)
Arsenical resistance operon repressor family protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AQ39_9CLOT
Arsenical resistance operon repressor family protein {ECO:0000313|EMBL:ERI67964.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ArsR family transcriptional regulator
L1_008_000M1_scaffold_123_7
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5750..6658
DNA (909bp) protein (303aa)
copper amine oxidase-like domain-containing protein n=1 Tax=Paenibacillus peoriae RepID=UPI00026C6830
copper amine oxidase-like domain-containing protein
Copper amine oxidase-like domain-containing protein {ECO:0000313|EMBL:ADZ81925.1}; Flags: Precursor;; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_008_000M1_scaffold_123_8
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6737..7228
DNA (492bp) protein (164aa)
DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Eubacterium sp. CAG:274 RepID=R6QCH3_9FIRM
DNA-directed RNA polymerase specialized sigma subunit {ECO:0000313|EMBL:CDC19577.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
RNA polymerase sigma-70 factor
L1_008_000M1_scaffold_123_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7221..8423
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI00037D1676
Uncharacterized protein {ECO:0000313|EMBL:AJG99357.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L1_008_000M1_scaffold_123_10
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8980..12612)
DNA (3633bp) protein (1211aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
DNA-directed RNA polymerase subunit beta' n=2 Tax=Clostridium thermocellum RepID=RPOC_CLOTH
L1_008_000M1_scaffold_123_11
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12732..16559)
DNA (3828bp) protein (1276aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUM2_CLOCD
L1_008_000M1_scaffold_123_12
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16927..17508)
DNA (582bp) protein (194aa)
Sortase and related acyltransferases (EC:2.3.1.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7I660_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE46976.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
L1_008_000M1_scaffold_123_13
Caldicellulosiruptor owensensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18306..21908
DNA (3603bp) protein (1201aa)
Pectinesterase n=1 Tax=Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) RepID=E4Q6L4_CALOW
pectinesterase
Pectinesterase {ECO:0000313|EMBL:ADQ05621.1}; TaxID=632518 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL).;"
L1_008_000M1_scaffold_123_14
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22544..25873)
DNA (3330bp) protein (1110aa)
Dockerin type I repeat./Ricin-type beta-trefoil lectin domain n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LD22_RUMC1
Dockerin type I repeat./Ricin-type beta-trefoil lectin domain.
Dockerin type I repeat./Ricin-type beta-trefoil lectin domain {ECO:0000313|EMBL:CBL17517.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_008_000M1_scaffold_123_15
uncultured Actinosynnema sp., Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26357..26833)
DNA (477bp) protein (159aa)
glycoside hydrolase n=1 Tax=Nocardiopsis halotolerans RepID=UPI0003489A6B
NLPC_P60 {ECO:0000313|EMBL:AIA95167.1}; Flags: Fragment;; TaxID=905025 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema; environmental samples.;" source="uncultured Actinosynnema sp.;"
NLP/P60 protein
L1_008_000M1_scaffold_123_16
unknown

Not on your lists

26939..27268
DNA (330bp) protein (110aa)

This feature has no annotations

L1_008_000M1_scaffold_123_17
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

27404..30601
DNA (3198bp) protein (1066aa)
Putative two-component system hybrid sensor and regulator n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GSS2_SELRL
putative two-component system hybrid sensor and regulator
Putative two-component system hybrid sensor and regulator {ECO:0000313|EMBL:BAL83809.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L1_008_000M1_scaffold_123_18
Paenibacillus sp. FSL R7-0331, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30778..33276)
DNA (2499bp) protein (833aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI00038227C7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ51360.1}; TaxID=1536773 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-0331.;"
L1_008_000M1_scaffold_123_19
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33356..34048)
DNA (693bp) protein (231aa)
LrgB family protein n=4 Tax=Lachnospiraceae RepID=E5XJC3_9FIRM
Putative TIGR00659 family protein {ECO:0000313|EMBL:EDK23742.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Putative effector of murein hydrolase
L1_008_000M1_scaffold_123_20
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

comp(34048..34434)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H8C7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY21172.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
Putative effector of murein hydrolase LrgA
L1_008_000M1_scaffold_123_21
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

34536..35051
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YC12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13918.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L1_008_000M1_scaffold_123_22
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

35074..35817
DNA (744bp) protein (248aa)
Predicted DNA alkylation repair enzyme n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGM7_9FIRM
Predicted DNA alkylation repair enzyme {ECO:0000313|EMBL:CDB95144.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_123_23
unknown

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comp(35908..36465)
DNA (558bp) protein (186aa)

This feature has no annotations

L1_008_000M1_scaffold_123_24
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(36462..37220)
DNA (759bp) protein (253aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MGG4_9FIRM
hypothetical protein
L1_008_000M1_scaffold_123_25
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37235..38440)
DNA (1206bp) protein (402aa)
Uncharacterized homolog of PSP1 n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NIW4_9FIRM
Uncharacterized homolog of PSP1 {ECO:0000313|EMBL:CDF13384.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
putative PSP1-like protein
L1_008_000M1_scaffold_123_26
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38412..39395)
DNA (984bp) protein (328aa)
DNA polymerase III, delta prime subunit (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B825_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD60931.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
L1_008_000M1_scaffold_123_27
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39400..40827)
DNA (1428bp) protein (476aa)
Arginine/lysine/ornithine decarboxylase {ECO:0000313|EMBL:EMS73603.1}; EC=4.1.1.19 {ECO:0000313|EMBL:EMS73603.1};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Arginine/lysine/ornithine decarboxylase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FYD3_9CLOT
arginine/lysine/ornithine decarboxylase
L1_008_000M1_scaffold_123_28
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists


comp(40853..42235)
DNA (1383bp) protein (461aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
glyQS; Glycine-tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MJH3_9FIRM
L1_008_000M1_scaffold_123_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43694..44791
DNA (1098bp) protein (366aa)
ATPase n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UZK7_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:KIL08258.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
hypothetical protein
L1_008_000M1_scaffold_123_30
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(44908..45939)
DNA (1032bp) protein (344aa)
PfkB domain protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EQB7_9FIRM
PfkB domain protein {ECO:0000313|EMBL:CDA99384.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
ribokinase-like domain-containing protein
Displaying items 1-30 of 79 in total

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