ggKbase home page

L1_008_000M1_scaffold_1912

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1912_1
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

299..1381
DNA (1083bp) protein (361aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
Aminomethyltransferase n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UTM6_9DELT
glycine cleavage system T protein
L1_008_000M1_scaffold_1912_2
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1459..1845
DNA (387bp) protein (129aa)
Glycine cleavage system H protein n=1 Tax=Desulfovibrio sp. 3_1_syn3 RepID=D9YC63_9DELT
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
glycine cleavage system H protein
L1_008_000M1_scaffold_1912_3
unknown

Not on your lists

2011..2199
DNA (189bp) protein (63aa)

This feature has no annotations

L1_008_000M1_scaffold_1912_4
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2301..3632
DNA (1332bp) protein (444aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Desulfovibrio sp. 3_1_syn3 RepID=D9YC62_9DELT
L1_008_000M1_scaffold_1912_5
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3629..5086
DNA (1458bp) protein (486aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC61_9DELT
L1_008_000M1_scaffold_1912_6
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5148..6260)
DNA (1113bp) protein (371aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UTN0_9DELT
tRNA uridine-sulfurtransferase
L1_008_000M1_scaffold_1912_7
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6652..7401)
DNA (750bp) protein (250aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC58_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51001.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
ABC transporter-like protein
L1_008_000M1_scaffold_1912_8
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7388..8191)
DNA (804bp) protein (268aa)
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region n=2 Tax=Desulfovibrio RepID=D9YC56_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51003.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
polar amino acid ABC transporter inner membrane subunit
L1_008_000M1_scaffold_1912_9
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8312..9055)
DNA (744bp) protein (248aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC55_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51004.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
family 3 extracellular solute-binding protein
L1_008_000M1_scaffold_1912_10
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9376..10020)
DNA (645bp) protein (215aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC54_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51005.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1912_11
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10160..11530
DNA (1371bp) protein (457aa)
Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UTN7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51006.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
O-antigen polymerase
L1_008_000M1_scaffold_1912_12
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11523..13037
DNA (1515bp) protein (505aa)
Polyphosphate:AMP phosphotransferase n=1 Tax=Desulfovibrio sp. 3_1_syn3 RepID=D9YC52_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51007.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1912_13
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13095..14111)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UTN9_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51008.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
thymidylate synthase complementing protein ThyX
L1_008_000M1_scaffold_1912_14
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14134..15345
DNA (1212bp) protein (404aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UTP0_9DELT
L1_008_000M1_scaffold_1912_15
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15363..16310
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UTP1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51010.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1912_16
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16403..17785)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC48_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51011.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
cytochrome C peroxidase
L1_008_000M1_scaffold_1912_17
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18284..19897
DNA (1614bp) protein (538aa)
Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UTP3_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51012.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1912_18
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20067..20618)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC79_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51083.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1912_19
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20882..21349
DNA (468bp) protein (156aa)
Universal stress protein n=2 Tax=Desulfovibrio RepID=D9YC80_9DELT
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
UspA domain-containing protein
L1_008_000M1_scaffold_1912_20
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21437..22573
DNA (1137bp) protein (379aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
Histidinol-phosphate aminotransferase n=2 Tax=Desulfovibrio RepID=D9YC81_9DELT
histidinol-phosphate aminotransferase
L1_008_000M1_scaffold_1912_21
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22570..23271
DNA (702bp) protein (234aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=2 Tax=Desulfovibrio RepID=D9YC82_9DELT
L1_008_000M1_scaffold_1912_22
unknown

Not on your lists

comp(23225..23761)
DNA (537bp) protein (179aa)

This feature has no annotations

L1_008_000M1_scaffold_1912_23
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23775..24488
DNA (714bp) protein (238aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC83_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51079.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_1912_24
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24622..25491)
DNA (870bp) protein (290aa)
Uncharacterized protein n=2 Tax=Desulfovibrio RepID=D9YC84_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW51078.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
family 2 glycosyl transferase
L1_008_000M1_scaffold_1912_25
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25503..26462)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. 3_1_syn3 RepID=D9YAF2_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW50583.1}; TaxID=665942 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
FkbM family methyltransferase
L1_008_000M1_scaffold_1912_26
Lawsonia intracellularis, Lawsonia, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26587..27486)
DNA (900bp) protein (300aa)
Glycosyltransferase n=2 Tax=Lawsonia intracellularis RepID=M1GDL9_LAWIN
glycosyl transferase
Probable glycosyl transferase {ECO:0000313|EMBL:CAJ54037.1}; TaxID=363253 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Lawsonia.;" source="Lawsonia intracellularis (strain PHE/MN1-00).;"
L1_008_000M1_scaffold_1912_27
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

27515..28504
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=filamentous cyanobacterium ESFC-1 RepID=UPI00035DFBFC
Glycosyl transferase {ECO:0000313|EMBL:CDM65091.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glycosyltransferase family 2 protein
L1_008_000M1_scaffold_1912_28
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28547..29308
DNA (762bp) protein (254aa)
Glycosyl transferase, family 2 n=3 Tax=Desulfovibrio vulgaris RepID=A1VHX4_DESVV
glycosyl transferase, group 2 family protein
Glycosyl transferase, group 2 family protein {ECO:0000313|EMBL:AAS94467.1}; TaxID=882 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB; 8303).;"
Displaying 28 items

View Taxonomy