ggKbase home page

L1_008_000M1_scaffold_9386

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_9386_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..846
DNA (846bp) protein (282aa)
CHAP domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JRB8_9FIRM
CHAP domain.
CHAP domain {ECO:0000313|EMBL:CBK95637.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_9386_2
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

964..1575
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MZV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS76251.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
Transcriptional regulator
L1_008_000M1_scaffold_9386_3

Not on your lists

1575..2336
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase (Fragment) n=1 Tax=human gut metagenome RepID=K1SM95_9ZZZZ
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:EKC54965.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
L1_008_000M1_scaffold_9386_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2427..3020
DNA (594bp) protein (198aa)
ABC transporter ATP-binding protein n=4 Tax=Firmicutes RepID=Q1JB95_STRPB
ABC transporter ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EGG86050.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L1_008_000M1_scaffold_9386_5
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3010..5571
DNA (2562bp) protein (854aa)
ABC transporter permease n=4 Tax=Clostridiales RepID=E5XJN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25799.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ABC transporter permease
L1_008_000M1_scaffold_9386_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5640..6320
DNA (681bp) protein (227aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QAS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25800.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator
L1_008_000M1_scaffold_9386_7
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6323..7078
DNA (756bp) protein (252aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
two-component system histidine kinase (EC:2.7.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KNH7_9CLOT
L1_008_000M1_scaffold_9386_8

Not on your lists

comp(7193..7471)
DNA (279bp) protein (93aa)
Protein containing Helix-turn-helix type 3 domain protein n=2 Tax=human gut metagenome RepID=K1TBH7_9ZZZZ
Predicted transcription factor, homolog of eukaryotic MBF1
Protein containing Helix-turn-helix type 3 domain protein {ECO:0000313|EMBL:EKC63845.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Displaying 8 items

View Taxonomy