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L1_008_000M1_scaffold_5974

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_5974_1
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..449)
DNA (447bp) protein (149aa)
UPF0313 protein BN626_01324 n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TNM2_9FIRM
Fe-S oxidoreductase
UPF0313 protein EUR_12570 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_008_000M1_scaffold_5974_2
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(476..1228)
DNA (753bp) protein (251aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Pseudouridine synthase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Y4_EUBR3
16S pseudouridylate synthase
L1_008_000M1_scaffold_5974_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1229..2143
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Y3_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75424.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_008_000M1_scaffold_5974_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2123..2779)
DNA (657bp) protein (219aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=R6TNL7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK90364.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_008_000M1_scaffold_5974_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2793..3278)
DNA (486bp) protein (162aa)
pantetheine-phosphate adenylyltransferase, bacterial (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Phosphopantetheine adenylyltransferase n=4 Tax=Eubacterium RepID=COAD_EUBR3
L1_008_000M1_scaffold_5974_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3289..3705)
DNA (417bp) protein (139aa)
Site-specific DNA-methyltransferase (Adenine-specific) n=3 Tax=Eubacterium rectale RepID=C4Z9Y0_EUBR3
RNA methyltransferase, RsmD family
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:ACR75421.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_008_000M1_scaffold_5974_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3772..4320)
DNA (549bp) protein (183aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CBK94491.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CBK94491.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Phosphatidylglycerophosphate synthase n=4 Tax=Eubacterium RepID=C4Z9X9_EUBR3
L1_008_000M1_scaffold_5974_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4317..5642)
DNA (1326bp) protein (442aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Ribosomal protein S12 methylthiotransferase RimO n=3 Tax=Eubacterium RepID=C4Z9X8_EUBR3
MiaB-like tRNA modifying enzyme YliG
L1_008_000M1_scaffold_5974_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5708..5968)
DNA (261bp) protein (87aa)
DNA-directed RNA polymerase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; Short=RNAP omega subunit {ECO:0000255|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00366};; RNA polymerase omega subunit {ECO:0000255|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=RPOZ_EUBR3
hypothetical protein
L1_008_000M1_scaffold_5974_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5970..6629)
DNA (660bp) protein (220aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Guanylate kinase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4L8_9FIRM
L1_008_000M1_scaffold_5974_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6645..7661)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=2 Tax=Eubacterium rectale RepID=C4Z9X5_EUBR3
conserved hypothetical protein TIGR00255
Uncharacterized protein {ECO:0000313|EMBL:ACR75416.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_008_000M1_scaffold_5974_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7663..9405
DNA (1743bp) protein (581aa)
Predicted RNA-binding protein homologous to eukaryotic snRNP n=1 Tax=Eubacterium rectale M104/1 RepID=D4JLJ9_9FIRM
Predicted RNA-binding protein homologous to eukaryotic snRNP {ECO:0000313|EMBL:CBK94496.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Predicted RNA-binding protein homologous to eukaryotic snRNP
L1_008_000M1_scaffold_5974_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9528..9839)
DNA (312bp) protein (104aa)
RecG-like helicase (EC:3.6.1.-)
RecG-like helicase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JLK0_9FIRM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:ACR75414.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Displaying 13 items

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