ggKbase home page

L1_008_000M1_scaffold_10418

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_10418_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..866)
DNA (864bp) protein (288aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EEG29911.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EEG29911.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
asd; Aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N6R5_9CLOT
L1_008_000M1_scaffold_10418_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1305..2195
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48074.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
lytB; amidase enhancer
L1_008_000M1_scaffold_10418_3
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

2259..2687
DNA (429bp) protein (143aa)
SpoIID/LytB domain protein n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BGK2_THEXL
SpoIID/LytB domain-containing protein
SpoIID/LytB domain protein {ECO:0000313|EMBL:AEF17464.1}; Flags: Precursor;; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
L1_008_000M1_scaffold_10418_4
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3009..4034
DNA (1026bp) protein (342aa)
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Coprococcus catus GD/7 RepID=D4J8P0_9FIRM
L1_008_000M1_scaffold_10418_5
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4053..5183
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
queuine tRNA-ribosyltransferase n=1 Tax=Clostridium tyrobutyricum RepID=UPI00038224AE
queuine tRNA-ribosyltransferase
L1_008_000M1_scaffold_10418_6

Not on your lists

5420..5992
DNA (573bp) protein (191aa)
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JFS2_9FIRM
Amino acid ABC transporter, permease/substrate-binding protein {ECO:0000313|EMBL:AHF25390.1}; TaxID=1393421 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig137.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
Displaying 6 items

View Taxonomy