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L1_008_000M1_scaffold_1960

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1960_1
unknown

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3..125
DNA (123bp) protein (41aa)

This feature has no annotations

L1_008_000M1_scaffold_1960_2
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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603..1382
DNA (780bp) protein (260aa)
Conserved repeat protein n=1 Tax=Clostridium sp. CAG:230 RepID=R6E8B0_9CLOT
Conserved repeat protein {ECO:0000313|EMBL:CDA86477.1}; TaxID=1262782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:230.;"
conserved repeat domain
L1_008_000M1_scaffold_1960_3
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1549..2367)
DNA (819bp) protein (273aa)
putative S-layer associated protein n=1 Tax=Paenibacillus elgii RepID=UPI000248C23D
Copper amine oxidase-like protein {ECO:0000313|EMBL:GAE88622.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
L1_008_000M1_scaffold_1960_4
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2384..3541)
DNA (1158bp) protein (386aa)
Peptidase M56, BlaR1 {ECO:0000313|EMBL:CFY01956.1}; TaxID=690567 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;"
L1_008_000M1_scaffold_1960_5
unknown

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comp(3562..4665)
DNA (1104bp) protein (368aa)

This feature has no annotations

L1_008_000M1_scaffold_1960_6
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4670..5506)
DNA (837bp) protein (279aa)
Peptidase M56, BlaR1 n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XKR6_CALS8
Peptidase M56, BlaR1 {ECO:0000313|EMBL:CFY01956.1}; TaxID=690567 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;"
peptidase M56, BlaR1
L1_008_000M1_scaffold_1960_7
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5512..5883)
DNA (372bp) protein (124aa)
beta-lactamase repressor n=1 Tax=Paenibacillus elgii RepID=UPI000248C270
Beta-lactamase repressor {ECO:0000313|EMBL:KEQ26351.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
transcriptional repressor, CopY family
L1_008_000M1_scaffold_1960_8
Clostridium sp. CAG:567, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6096..6779
DNA (684bp) protein (228aa)
Hemolysin III family channel protein n=1 Tax=Clostridium sp. CAG:567 RepID=R7MBM4_9CLOT
Hemolysin III family channel protein {ECO:0000313|EMBL:CDE97308.1}; TaxID=1262820 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:567.;"
hypothetical protein
L1_008_000M1_scaffold_1960_9
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6895..7296)
DNA (402bp) protein (134aa)
Transition state transcriptional regulatory protein AbrB n=1 Tax=Desmospora sp. 8437 RepID=F5SJK9_9BACL
Transcriptional regulator, AbrB family domain protein {ECO:0000313|EMBL:KIE47196.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
AbrB family transcriptional regulator
L1_008_000M1_scaffold_1960_10
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7426..9390)
DNA (1965bp) protein (655aa)
Spore germination protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VSK1_CLOSH
spore germination protein
Spore germination protein GerAB {ECO:0000313|EMBL:AGC68533.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_008_000M1_scaffold_1960_11
unknown

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comp(9468..9740)
DNA (273bp) protein (91aa)

This feature has no annotations

L1_008_000M1_scaffold_1960_12
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9788..11311)
DNA (1524bp) protein (508aa)
spore germination protein GerA n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E7DC
GerA spore germination protein
GerA spore germination protein {ECO:0000313|EMBL:ABN51902.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_008_000M1_scaffold_1960_13
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11400..12113)
DNA (714bp) protein (238aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1THU0_9CLOT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EGD46072.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
short-chain dehydrogenase/reductase SDR
L1_008_000M1_scaffold_1960_14
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(12139..12630)
DNA (492bp) protein (164aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BKA8_9FIRM
L1_008_000M1_scaffold_1960_15
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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12834..14051
DNA (1218bp) protein (406aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MW78_9FIRM
L1_008_000M1_scaffold_1960_16
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14525..15082
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Clostridium sp. CAG:964 RepID=R6TXA6_9CLOT
efp; Elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L1_008_000M1_scaffold_1960_17
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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15130..15546
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M4X5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94708.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_1960_18
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15623..15880)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IHC2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI59193.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Helix-turn-helix.
L1_008_000M1_scaffold_1960_19
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16277..17347
DNA (1071bp) protein (357aa)
Peptidase domain protein n=3 Tax=Clostridium cellulovorans RepID=D9ST60_CLOC7
peptidase domain-containing protein
Peptidase domain protein {ECO:0000313|EMBL:ADL50676.1}; Flags: Precursor;; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L1_008_000M1_scaffold_1960_20
unknown

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17360..17629
DNA (270bp) protein (90aa)

This feature has no annotations

Displaying 20 items

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