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L1_008_000M1_scaffold_2067

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2067_1
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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412..969
DNA (558bp) protein (186aa)
Transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UWC5_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDC74992.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Transcriptional regulators
L1_008_000M1_scaffold_2067_2
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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966..2003
DNA (1038bp) protein (346aa)
yugH; putative aminotransferase YugH (EC:2.6.1.-)
Putative aminotransferase YugH {ECO:0000313|EMBL:CDZ24486.1}; EC=2.6.1.- {ECO:0000313|EMBL:CDZ24486.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Aminotransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEP6_9FIRM
L1_008_000M1_scaffold_2067_3
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2248..3006)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI0002F469A5
Transcriptional repressor of the myo-inositol catabolic operon DeoR family {ECO:0000313|EMBL:CDL92235.1}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
iolR; HTH-type transcriptional regulator IolR
L1_008_000M1_scaffold_2067_4
Firmicutes bacterium CAG:449, Firmicutes, Bacteria

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3150..4535
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:449 RepID=R6RIR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC45224.1}; TaxID=1263023 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:449.;"
mate efflux family protein
L1_008_000M1_scaffold_2067_5
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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4736..5326
DNA (591bp) protein (197aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKG0_9FIRM
Holliday junction DNA helicase RuvA
L1_008_000M1_scaffold_2067_6
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5370..6386
DNA (1017bp) protein (339aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridium sp. CAG:678 RepID=R5L6V0_9CLOT
Holliday junction DNA helicase RuvB
L1_008_000M1_scaffold_2067_7
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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6446..8395
DNA (1950bp) protein (650aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Methionine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MYC4_9FIRM
metG; methionyl-tRNA synthetase
L1_008_000M1_scaffold_2067_8
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8720..9646
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Bacteroides clarus CAG:160 RepID=R6L432_9BACE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM56581.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
L1_008_000M1_scaffold_2067_9
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9784..11709
DNA (1926bp) protein (642aa)
apu; amylopullulanase Apu (EC:3.2.1.1 3.2.1.41)
Amylopullulanase Apu {ECO:0000313|EMBL:AFS77675.1}; EC=3.2.1.1 {ECO:0000313|EMBL:AFS77675.1};; EC=3.2.1.41 {ECO:0000313|EMBL:AFS77675.1};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
Amylopullulanase Apu n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AY42_CLOA9
L1_008_000M1_scaffold_2067_10
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11767..12486
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NGI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ03270.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
hypothetical protein
L1_008_000M1_scaffold_2067_11
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(12550..14862)
DNA (2313bp) protein (771aa)
Cellulosome enzyme dockerin type I n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NCE3_9FIRM
Cellulosome enzyme dockerin type I {ECO:0000313|EMBL:CDB95522.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_2067_12
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(14902..15588)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MIK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94086.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_2067_13
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(15629..16366)
DNA (738bp) protein (246aa)
VTC domain n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N849_9FIRM
VTC domain {ECO:0000313|EMBL:CDB94082.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
Displaying 13 items

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