ggKbase home page

L1_008_000M1_scaffold_1176

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1176_1
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(78..2450)
DNA (2373bp) protein (791aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZUT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34277.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Rad3-related DNA helicases
L1_008_000M1_scaffold_1176_2
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2695..3546)
DNA (852bp) protein (284aa)
Putative membrane protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YE64_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDD34278.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1176_3
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3814..5169
DNA (1356bp) protein (452aa)
Arginine/lysine/ornithine decarboxylases (EC:4.1.1.18)
Orn/Lys/Arg decarboxylase major region n=1 Tax=Clostridium sp. CAG:167 RepID=R5W3U0_9CLOT
Orn/Lys/Arg decarboxylase major region {ECO:0000313|EMBL:CCZ90421.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
L1_008_000M1_scaffold_1176_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5187..5771
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YK61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34280.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
guanylate kinase
L1_008_000M1_scaffold_1176_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5853..6293
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z070_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34281.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1176_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6301..7299
DNA (999bp) protein (333aa)
DNA polymerase III, delta prime subunit (EC:2.7.7.7)
DNA polymerase III delta prime subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZUU2_9FIRM
DNA polymerase III delta prime subunit {ECO:0000313|EMBL:CDD34282.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1176_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7324..8235
DNA (912bp) protein (304aa)
Uncharacterized homolog of PSP1 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YE67_9FIRM
Uncharacterized homolog of PSP1 {ECO:0000313|EMBL:CDD34283.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Uncharacterized homolog of PSP1
L1_008_000M1_scaffold_1176_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8235..8966
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7P0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73323.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Predicted O-methyltransferase
L1_008_000M1_scaffold_1176_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8981..9820
DNA (840bp) protein (280aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Clostridium sp. CAG:62 RepID=R7C6F5_9CLOT
conserved hypothetical protein TIGR00096
L1_008_000M1_scaffold_1176_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9982..10239)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YQI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36125.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
AbrB family transcriptional regulator
L1_008_000M1_scaffold_1176_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10385..10879)
DNA (495bp) protein (165aa)
Heptaprenyl diphosphate synthase component I n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTM9_9FIRM
Heptaprenyl diphosphate synthase component I {ECO:0000313|EMBL:CDD34759.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Predicted membrane protein
L1_008_000M1_scaffold_1176_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10895..11272)
DNA (378bp) protein (126aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:309 RepID=R6YFG1_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDD34758.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1176_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11506..13263
DNA (1758bp) protein (586aa)
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases (EC:6.2.1.1)
AMP-binding enzyme n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZW82_9FIRM
AMP-binding enzyme {ECO:0000313|EMBL:CDD34757.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1176_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13338..14363
DNA (1026bp) protein (342aa)
branched-chain amino acid aminotransferase, group II (EC:2.6.1.42)
Branched-chain amino acid aminotransferase group II n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1G4_9FIRM
Branched-chain amino acid aminotransferase group II {ECO:0000313|EMBL:CDD34756.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1176_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14449..14925
DNA (477bp) protein (159aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
S-ribosylhomocysteinase (EC:4.4.1.21)
S-ribosylhomocysteine lyase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLM9_9FIRM
L1_008_000M1_scaffold_1176_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14984..15550
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34754.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1176_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15622..16293
DNA (672bp) protein (224aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YFF6_9FIRM
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family
L1_008_000M1_scaffold_1176_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16633..17994
DNA (1362bp) protein (454aa)
Arylsulfatase regulator (Fe-S oxidoreductase) n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z134_9FIRM
Arylsulfatase regulator (Fe-S oxidoreductase) {ECO:0000313|EMBL:CDD34601.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
arylsulfatase regulator (Fe-S oxidoreductase)
L1_008_000M1_scaffold_1176_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18155..19141
DNA (987bp) protein (329aa)
Cell shape determining protein MreB/Mrl family n=1 Tax=Clostridium sp. CAG:62 RepID=R7C870_9CLOT
Cell shape determining protein MreB/Mrl family {ECO:0000313|EMBL:CDD74354.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
rod shape-determining protein MreB
L1_008_000M1_scaffold_1176_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19152..19928
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZVW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34617.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
flagellar basal body rod protein
L1_008_000M1_scaffold_1176_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19947..20756
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YF41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34618.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1176_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20778..21173
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34619.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1176_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21250..23493
DNA (2244bp) protein (748aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
recombinase D (EC:3.1.11.5)
Helicase RecD/TraA family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLA1_9FIRM
L1_008_000M1_scaffold_1176_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23543..24247
DNA (705bp) protein (235aa)
Amidophosphoribosyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z149_9FIRM
Amidophosphoribosyltransferase {ECO:0000313|EMBL:CDD34621.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
amidophosphoribosyltransferase
L1_008_000M1_scaffold_1176_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24298..24705
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZVW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34622.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1176_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24724..25878
DNA (1155bp) protein (385aa)
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YF46_9FIRM
UDP-galactopyranose mutase {ECO:0000313|EMBL:CDD34623.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1176_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25900..26916
DNA (1017bp) protein (339aa)
Glycosyl transferase family 2 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT97_9FIRM
Glycosyl transferase family 2 {ECO:0000313|EMBL:CDD34624.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Glycosyltransferases involved in cell wall biogenesis
Displaying 27 items

View Taxonomy