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L1_008_000M1_scaffold_1266

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1266_1
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(181..732)
DNA (552bp) protein (184aa)
alpha/beta hydrolase n=1 Tax=Butyrivibrio sp. AE2015 RepID=UPI0003B6E9C2
Uncharacterized protein {ECO:0000313|EMBL:ETO96412.1}; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
Hypothetical protein
L1_008_000M1_scaffold_1266_2
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(729..1082)
DNA (354bp) protein (118aa)
Transposase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z614_9FIRM
Transposase {ECO:0000313|EMBL:CDD36331.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Transposase DDE domain.
L1_008_000M1_scaffold_1266_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1247..1672
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R7A0Q2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36332.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1266_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1713..2000)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YK80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36333.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1266_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2000..2884)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YYA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36334.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1266_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2886..3851)
DNA (966bp) protein (322aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Roseburia sp. CAG:309 RepID=R6YR21_9FIRM
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:CDD36335.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit
L1_008_000M1_scaffold_1266_7
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3997..4377
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KGB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS45261.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
L1_008_000M1_scaffold_1266_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4537..7386)
DNA (2850bp) protein (950aa)
Alpha-glucuronidase Gh115A n=1 Tax=Clostridium sp. CAG:62 RepID=R7C512_9CLOT
Alpha-glucuronidase Gh115A {ECO:0000313|EMBL:CDD73186.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
gh115A; alpha-glucuronidase
L1_008_000M1_scaffold_1266_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7507..8349
DNA (843bp) protein (281aa)
Transcriptional regulator AraC family n=1 Tax=Clostridium sp. CAG:62 RepID=R7C5E3_9CLOT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDD73185.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
AraC family transcriptional regulator
L1_008_000M1_scaffold_1266_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8474..9760
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35039.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
aspartate aminotransferase
L1_008_000M1_scaffold_1266_11
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9915..11009
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6BD37_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA51287.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
hypothetical protein
L1_008_000M1_scaffold_1266_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11069..11674)
DNA (606bp) protein (202aa)
Radical SAM superfamily n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMJ9_9FIRM
Radical SAM superfamily {ECO:0000313|EMBL:CDD35040.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Radical SAM superfamily.
L1_008_000M1_scaffold_1266_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11694..12158)
DNA (465bp) protein (155aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2D6_9FIRM
L1_008_000M1_scaffold_1266_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12271..13485)
DNA (1215bp) protein (405aa)
Riboflavin biosynthesis protein RibBA n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZX49_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
RibA; GTP cyclohydrolase II
L1_008_000M1_scaffold_1266_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13504..14151)
DNA (648bp) protein (216aa)
Riboflavin synthase alpha chain n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGD6_9FIRM
Riboflavin synthase alpha chain {ECO:0000313|EMBL:CDD35043.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
riboflavin synthase alpha chain
L1_008_000M1_scaffold_1266_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14162..15544)
DNA (1383bp) protein (461aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUG7_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1266_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15801..16550)
DNA (750bp) protein (250aa)
ABC transporter permease protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMK2_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDD35045.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sulfate ABC transporter permease
L1_008_000M1_scaffold_1266_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16556..17311)
DNA (756bp) protein (252aa)
ABC transporter ATP-binding protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2D8_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD35046.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ABC transporter-like protein
L1_008_000M1_scaffold_1266_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17314..18312)
DNA (999bp) protein (333aa)
ABC transporter substrate-binding protein aliphatic sulfonates family n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAF5_9CLOT
ABC transporter substrate-binding protein aliphatic sulfonates family {ECO:0000313|EMBL:CDD74702.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
TauA; ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components
L1_008_000M1_scaffold_1266_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18530..19612
DNA (1083bp) protein (361aa)
Transcriptional regulator LacI family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJF9_9FIRM
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDD36078.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Transcriptional regulators
L1_008_000M1_scaffold_1266_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19650..21554)
DNA (1905bp) protein (635aa)
ATP-binding region ATPase domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YXK3_9FIRM
ATP-binding region ATPase domain protein {ECO:0000313|EMBL:CDD36079.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ATP-binding region ATPase domain-containing protein
L1_008_000M1_scaffold_1266_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21579..23309)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YQE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36080.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1266_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23306..24028)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z5E2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36081.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Response regulator of the LytR/AlgR family
L1_008_000M1_scaffold_1266_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24115..24834)
DNA (720bp) protein (240aa)
Response regulator of the LytR/AlgR family n=1 Tax=Roseburia sp. CAG:309 RepID=R7A018_9FIRM
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CDD36082.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1266_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25051..25629
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36083.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Displaying 25 items

View Taxonomy