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L1_008_000M1_scaffold_1307

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1307_1
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..212)
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7AU42_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC55733.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
L1_008_000M1_scaffold_1307_2
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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436..657
DNA (222bp) protein (74aa)
Transposase family protein n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KDF0_HALHC
transposase family protein
Transposase family protein {ECO:0000313|EMBL:AGB42394.1}; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source="Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1).;"
L1_008_000M1_scaffold_1307_3
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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842..2590
DNA (1749bp) protein (583aa)
Putative phage tail component domain protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0M5_9CLOT
Putative phage tail component domain protein {ECO:0000313|EMBL:CDE69466.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein predicted by Glimmer/Critica
L1_008_000M1_scaffold_1307_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2609..4294)
DNA (1686bp) protein (562aa)
IgA Peptidase M64./Fibronectin type III domain n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2I5_9FIRM
IgA Peptidase M64./Fibronectin type III domain {ECO:0000313|EMBL:CDD35106.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
IgA Peptidase M64./Fibronectin type III domain.
L1_008_000M1_scaffold_1307_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4444..5667)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35105.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
antirepressor regulating drug resistance protein
L1_008_000M1_scaffold_1307_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5664..6047)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35104.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
blaI; penicillinase repressor
L1_008_000M1_scaffold_1307_7
unknown

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comp(6264..6464)
DNA (201bp) protein (67aa)

This feature has no annotations

L1_008_000M1_scaffold_1307_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6648..7865
DNA (1218bp) protein (406aa)
Alcohol dehydrogenase, class IV (EC:1.2.1.10)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35103.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1307_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7976..8356
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZXA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35102.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1307_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8454..8936)
DNA (483bp) protein (161aa)
ATP synthase epsilon chain n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2I1_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ATP synthase F1 subunit epsilon
L1_008_000M1_scaffold_1307_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8899..10299)
DNA (1401bp) protein (467aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ATP synthase subunit beta n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMP7_9FIRM
F0F1 ATP synthase subunit beta
L1_008_000M1_scaffold_1307_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10343..11224)
DNA (882bp) protein (294aa)
ATP synthase F1 subunit gamma (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUK6_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1307_13
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11244..12755)
DNA (1512bp) protein (504aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7Y2_9CLOT
L1_008_000M1_scaffold_1307_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12785..13330)
DNA (546bp) protein (182aa)
ATP synthase F1 subcomplex delta subunit (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2H8_9FIRM
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1307_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13318..13836)
DNA (519bp) protein (173aa)
ATP synthase subunit b n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMP4_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ATP synthase F0 subunit B
L1_008_000M1_scaffold_1307_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13873..14130)
DNA (258bp) protein (86aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0 C subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUK3_9FIRM
ATP synthase F0 C subunit {ECO:0000313|EMBL:CDD35094.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1307_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14167..14877)
DNA (711bp) protein (237aa)
ATP synthase subunit a n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGH9_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
ATP synthase F0 subunit A
L1_008_000M1_scaffold_1307_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14925..15326)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZX93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35092.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1307_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15298..15597)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2H5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35091.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1307_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15605..16399)
DNA (795bp) protein (265aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase ProC n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMP0_9FIRM
L1_008_000M1_scaffold_1307_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16431..16859)
DNA (429bp) protein (143aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUK0_9FIRM
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:CDD35089.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1307_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16863..18377)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35088.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Sua5/YciO/YrdC/YwlC family protein
L1_008_000M1_scaffold_1307_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18432..19133)
DNA (702bp) protein (234aa)
Cell wall hydrolase/autolysin n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7M4_9CLOT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:CDD74096.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
cell wall hydrolase/autolysin
L1_008_000M1_scaffold_1307_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19195..20913)
DNA (1719bp) protein (573aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35086.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
glycoside hydrolase family protein
L1_008_000M1_scaffold_1307_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21447..23486
DNA (2040bp) protein (680aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZZU2_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDD36002.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_1307_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23675..24067)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YW86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35629.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
putative transposase
L1_008_000M1_scaffold_1307_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24217..24513)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K290_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42308.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative IS3 family transposase orfA
Displaying 27 items

View Taxonomy