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L1_008_000M1_scaffold_1801

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1801_1
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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102..683
DNA (582bp) protein (194aa)
Site-specific recombinase XerD n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLH9_9FIRM
Site-specific recombinase XerD {ECO:0000313|EMBL:CDD34700.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Site-specific recombinase XerD
L1_008_000M1_scaffold_1801_2
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(913..1821)
DNA (909bp) protein (303aa)
Precorrin-6B methylase 2 n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1B4_9FIRM
Precorrin-6B methylase 2 {ECO:0000313|EMBL:CDD34701.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
CobL; precorrin-6B methylase 2
L1_008_000M1_scaffold_1801_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1960..2670
DNA (711bp) protein (237aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
methylthioadenosine nucleosidase (EC:3.2.2.16 3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZW34_9FIRM
L1_008_000M1_scaffold_1801_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2678..3553
DNA (876bp) protein (292aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Methionine aminopeptidase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YFA4_9FIRM
methionine aminopeptidase
L1_008_000M1_scaffold_1801_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3684..6194)
DNA (2511bp) protein (837aa)
xynD; Arabinoxylan arabinofuranohydrolase (EC:3.2.1.55)
Alpha-N-arabinofuranosidase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTH8_9FIRM
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:CDD34704.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1801_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6388..7161
DNA (774bp) protein (258aa)
Transcriptional regulator AraC family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLI4_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDD34705.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1801_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7165..7656)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34706.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1801_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7679..9109)
DNA (1431bp) protein (477aa)
Flagellin domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZW38_9FIRM
Flagellin domain protein {ECO:0000313|EMBL:CDD34707.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
flagellin domain-containing protein
L1_008_000M1_scaffold_1801_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9106..11898)
DNA (2793bp) protein (931aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YFA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34708.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1801_10
unknown

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comp(11910..12023)
DNA (114bp) protein (38aa)

This feature has no annotations

L1_008_000M1_scaffold_1801_11
unknown

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comp(12027..12395)
DNA (369bp) protein (123aa)

This feature has no annotations

L1_008_000M1_scaffold_1801_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12554..13171)
DNA (618bp) protein (206aa)
Stage II sporulation protein R n=1 Tax=Roseburia sp. CAG:309 RepID=R6YTI3_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:CDD34709.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
stage II sporulation protein R
L1_008_000M1_scaffold_1801_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13513..14376
DNA (864bp) protein (288aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YLI9_9FIRM
L1_008_000M1_scaffold_1801_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14393..16048
DNA (1656bp) protein (552aa)
Surface antigen BspA-like n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1C4_9FIRM
Surface antigen BspA-like {ECO:0000313|EMBL:CDD34711.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1801_15
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16231..16629)
DNA (399bp) protein (133aa)
peptidyl-prolyl cis-trans isomerase n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B726EE
Dinitrogenase iron-molybdenum cofactor {ECO:0000313|EMBL:EDS08012.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L1_008_000M1_scaffold_1801_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16633..16845)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YKI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34410.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1801_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17098..17547)
DNA (450bp) protein (150aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160974}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160970};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YSJ8_9FIRM
Dtd; D-Tyr-tRNAtyr deacylase
L1_008_000M1_scaffold_1801_18
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17581..18900)
DNA (1320bp) protein (440aa)
ADP-ribose pyrophosphatase (EC:3.6.1.-)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3B2F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG92661.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
L1_008_000M1_scaffold_1801_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19138..19887)
DNA (750bp) protein (250aa)
Transcriptional regulator LuxR family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YEJ0_9FIRM
Transcriptional regulator LuxR family {ECO:0000313|EMBL:CDD34408.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
LuxR family ATP-dependent transcriptional regulator
L1_008_000M1_scaffold_1801_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20165..20383)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZV83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34407.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1801_21
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20853..21704
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DR20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82618.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
MecA family protein
L1_008_000M1_scaffold_1801_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21878..22087)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YY05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36224.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_1801_23
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22279..22446
DNA (168bp) protein (56aa)
Ferredoxin n=1 Tax=Roseburia sp. CAG:309 RepID=R6YQS6_9FIRM
Ferredoxin {ECO:0000313|EMBL:CDD36225.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
4Fe-4S ferredoxin
Displaying 23 items

View Taxonomy