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L1_008_000M1_scaffold_1914

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1914_1
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

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121..849
DNA (729bp) protein (243aa)
XRE family transcriptional regulator n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B60FBB
Putative transcriptional regulator {ECO:0000313|EMBL:ETP73666.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
putative Xre family DNA-binding protein
L1_008_000M1_scaffold_1914_2
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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931..1788
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JIF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33597.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
AraC family transcriptional regulator
L1_008_000M1_scaffold_1914_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1796..2707)
DNA (912bp) protein (304aa)
Transcriptional regulator LysR family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YS33_9FIRM
Transcriptional regulator LysR family {ECO:0000313|EMBL:CDD34244.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
transcriptional regulator, LysR family
L1_008_000M1_scaffold_1914_4
unknown

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3200..3427
DNA (228bp) protein (76aa)

This feature has no annotations

L1_008_000M1_scaffold_1914_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3529..4794
DNA (1266bp) protein (422aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6YE28_9FIRM
L1_008_000M1_scaffold_1914_6
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4810..5295
DNA (486bp) protein (162aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZUP5_9FIRM
L1_008_000M1_scaffold_1914_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5317..6150
DNA (834bp) protein (278aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Pyridoxal/pyridoxine/pyridoxamine kinase (EC:2.7.1.35)
Putative pyridoxal kinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z028_9FIRM
L1_008_000M1_scaffold_1914_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6168..7373
DNA (1206bp) protein (402aa)
Putative dGTPase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YK19_9FIRM
Putative dGTPase {ECO:0000313|EMBL:CDD34240.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
phosphohydrolase
L1_008_000M1_scaffold_1914_9
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7354..8169)
DNA (816bp) protein (272aa)
Uncharacterized protein n=2 Tax=environmental samples RepID=R5NU12_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA67763.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
metallo-beta-lactamase
L1_008_000M1_scaffold_1914_10
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8237..8965)
DNA (729bp) protein (243aa)
AraC-family transcriptional regulator n=1 Tax=Clostridium sp. CAG:127 RepID=R5P034_9CLOT
AraC-family transcriptional regulator {ECO:0000313|EMBL:CCZ07659.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
hypothetical protein
L1_008_000M1_scaffold_1914_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9166..9789
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSX1_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDY31602.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Transcriptional regulator
L1_008_000M1_scaffold_1914_12
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9950..10537
DNA (588bp) protein (196aa)
TIGR02185 family protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TYJ3_9FIRM
TIGR02185 family protein {ECO:0000313|EMBL:CDC74924.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
conserved hypothetical integral membrane protein TIGR02185
L1_008_000M1_scaffold_1914_13
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10537..11253
DNA (717bp) protein (239aa)
ABC-type cobalt transport system permease component CbiQ and related transporters n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TNC3_9FIRM
ABC-type cobalt transport system permease component CbiQ and related transporters {ECO:0000313|EMBL:CDC74923.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L1_008_000M1_scaffold_1914_14
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11262..12701
DNA (1440bp) protein (480aa)
ABC transporter related protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UW39_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDC74922.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L1_008_000M1_scaffold_1914_15
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12725..14515
DNA (1791bp) protein (597aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZVL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA38541.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_1914_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14517..16250
DNA (1734bp) protein (578aa)
ABC transporter, ATP-binding protein n=2 Tax=Ruminococcus lactaris RepID=B5CSW9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY31600.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC transporter, permease/ATP-binding protein
L1_008_000M1_scaffold_1914_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16395..17510
DNA (1116bp) protein (372aa)
Methionine synthase II (Cobalamin-independent) n=1 Tax=Roseburia sp. CAG:309 RepID=R6YS28_9FIRM
Methionine synthase II (Cobalamin-independent) {ECO:0000313|EMBL:CDD34239.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Methionine synthase II (cobalamin-independent)
L1_008_000M1_scaffold_1914_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17836..18129
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34614.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1914_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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18120..19916
DNA (1797bp) protein (599aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34614.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_1914_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19952..20182
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34614.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Displaying 20 items

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